RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA408129", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA408129 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29460261 29460261 PRJNA408129_S_NODE_25390_length_166_cov_2.720930_g25372_i0 PRJNA408129 25390 166 2.72093 4.5167438 Desulfosarcina 2299 Bacteria Bacteria 63.5 1.95e-11   NR WP_155315378.1 571177 g25372 i0 60.9 4.98795180722892 46 18 83.1 0 27 164 45 90 WP_155315378.1 ComEA family DNA-binding protein [Desulfosarcina alkanivorans] diamond 828 63.9 0.993740219092332 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina alkanivorans
30043875 30043875 PRJNA408129_S_NODE_9791_length_223_cov_2.295699_g9773_i0 PRJNA408129 9791 223 2.295699 5.11940877 Desulfobacterota bacterium AH_259_B03_O07 2935766 Bacteria Bacteria 42.7 0.0266   NR MDA2918691.1 2935766 g9773 i0 60 0.403587443946188 30 11 40.4 1 206 117 136 164 MDA2918691.1 GNAT family N-acetyltransferase [Desulfobacterota bacterium AH_259_B03_O07] diamond 90 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Desulfobacterota bacterium AH_259_B03_O07
30991919 30991919 PRJNA408129_S_NODE_25414_length_166_cov_2.496124_g25396_i0 PRJNA408129 25414 166 2.496124 4.14356584 Desulfobacterales bacterium 2044940 Bacteria Bacteria 45.8 0.00105   NR MBF0101432.1 2044940 g25396 i0 37.9 1.04819277108434 58 30 94 1 9 164 5 62 MBF0101432.1 hypothetical protein [Desulfobacterales bacterium] diamond 174 45.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32762176 32762176 PRJNA408129_S_NODE_2440_length_320_cov_3.268551_g2422_i0 PRJNA408129 2440 320 3.268551 10.4593632 unclassified Desulfovibrio 2593640 Bacteria Bacteria 43.9 0.0346   NR WP_333536641.1 2593640 g2422 i0 42.2 0.421875 45 26 42.2 0 177 311 33 77 WP_333536641.1 MULTISPECIES: primase-helicase family protein [unclassified Desulfovibrio] diamond 135 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;