RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA408129", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA408129 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27423431 27423431 PRJNA408129_S_NODE_20283_length_178_cov_2.666667_g20265_i0 PRJNA408129 20283 178 2.666667 4.74666726 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 93.2 2.36e-21   NR HXH29219.1 2081706 g20265 i0 81.8 0.926966292134832 55 10 92.7 0 4 168 64 118 HXH29219.1 ATP-binding cassette domain-containing protein [Bacteriovoracaceae bacterium] diamond 165 93.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
27612765 27612765 PRJNA408129_S_NODE_15024_length_195_cov_5.759494_g15006_i0 PRJNA408129 15024 195 5.759494 11.2310133 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 94.4 5.59e-23   NR NJM09681.1 2026715 g15006 i0 78 0.769230769230769 50 11 76.9 0 31 180 1 50 NJM09681.1 thioredoxin [Pseudobdellovibrionaceae bacterium] diamond 150 94.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27770706 27770706 PRJNA408129_S_NODE_23224_length_171_cov_1.440299_g23206_i0 PRJNA408129 23224 171 1.440299 2.46291129 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 70.1 1.58e-12   NR MCO5113548.1 2026715 g23206 i0 68.6 0.894736842105263 51 15 87.7 1 1 150 222 272 MCO5113548.1 Na(+)-translocating NADH-quinone reductase subunit C [Pseudobdellovibrionaceae bacterium] diamond 153 70.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28338862 28338862 PRJNA408129_S_NODE_20726_length_177_cov_1.957143_g20708_i0 PRJNA408129 20726 177 1.957143 3.46414311 Bacteriovorax sp. 2608087 Bacteria Bacteria 120 9.9e-31   NR MBC7711840.1 2608087 g20708 i0 100 0.983050847457627 58 0 98.3 0 176 3 173 230 MBC7711840.1 maltose/maltodextrin ABC transporter substrate-binding protein MalE [Bacteriovorax sp.] diamond 174 120 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
30455054 30455054 PRJNA408129_S_NODE_7133_length_243_cov_5.296117_g7115_i0 PRJNA408129 7133 243 5.296117 12.86956431 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 140 5.86e-40   NR MFP5387564.1 3058048 g7115 i0 100 2.51851851851852 68 0 84 0 232 29 139 206 MFP5387564.1 transposase [Bacteriovoracia bacterium] diamond 612 140 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
30612521 30612521 PRJNA408129_S_NODE_6253_length_251_cov_6.635514_g6235_i0 PRJNA408129 6253 251 6.635514 16.65514014 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 42.7 0.0369   NR MFN9067948.1 2053517 g6235 i0 39 0.705179282868526 59 33 69.3 2 234 61 123 179 MFN9067948.1 hypothetical protein [Bdellovibrionales bacterium] diamond 177 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;