RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA408129", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA408129 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27580979 27580979 PRJNA408129_S_NODE_6504_length_249_cov_3.363208_g6486_i0 PRJNA408129 6504 249 3.363208 8.37438792 Chytridium lagenaria 64509 Fungi Fungi 42.7 0.0376   NR KAI8842530.1 64509 g6486 i0 43.9 0.686746987951807 57 29 65.1 1 1 162 192 248 KAI8842530.1 syntaxin 6, N-terminal-domain-containing protein [Chytridium lagenaria] diamond 171 42.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium lagenaria
29223088 29223088 PRJNA408129_S_NODE_13789_length_201_cov_1.670732_g13771_i0 PRJNA408129 13789 201 1.670732 3.35817132 Irineochytrium annulatum 109884 Fungi Fungi 48.9 1.4e-4   NR KAJ3191567.1 109884 g13771 i0 70 0.447761194029851 30 9 44.8 0 199 110 522 551 KAJ3191567.1 hypothetical protein HK101_007594 [Irineochytrium annulatum] diamond 90 48.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Irineochytrium Irineochytrium annulatum
32825190 32825190 PRJNA408129_S_NODE_10820_length_216_cov_8.949721_g10802_i0 PRJNA408129 10820 216 8.949721 19.33139736 Powellomyces hirtus 109895 Fungi Fungi 39.7 0.0388   NR TPX62661.1 109895 g10802 i0 44.4 0.5 36 20 50 0 104 211 16 51 TPX62661.1 hypothetical protein PhCBS80983_g00324 [Powellomyces hirtus] diamond 108 39.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Powellomyces Powellomyces hirtus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;