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contig_metadata

32 rows where bioproject = "PRJNA408129" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 32 ✖

bioproject 1

  • PRJNA408129 · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
418527 418527 PRJNA408129_S_NODE_5161_length_265_cov_2.653509_g5143_i0 PRJNA408129 5161 265 2.653509 7.03179885 Chlorophyta 3041 Plants Plants 130 2.78e-35   NR XP_001693710.1 3055 g5143 i0 83.8 6.35094339622642 80 12 90.6 1 1 240 177 255 XP_001693710.1 ribosomal protein S3a [Chlamydomonas reinhardtii] diamond 1683 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4245384 4245384 PRJNA408129_S_NODE_12864_length_205_cov_4.464286_g12846_i0 PRJNA408129 12864 205 4.464286 9.1517863 Trebouxia lynnae 1825957 Plants Plants 353 4.38e-93   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g12846 i0 98.03 27.390243902439 203 4 99 0 3 205 197226 197428 Trebouxia sp. TR9 chloroplast, partial genome blastn 5615 353 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
4245405 4245405 PRJNA408129_S_NODE_14904_length_196_cov_2.232704_g14886_i0 PRJNA408129 14904 196 2.232704 4.37609984 Trebouxia sp. SL0000003 3350044 Plants Plants 108 3.57e-19   NTclustered gi|2917929623|emb|OZ234911.1| 3350044 g14886 i0 95.522 0.341836734693878 67 3 34 0 2 68 3352184 3352250 Trebouxia sp. SL0000003 genome assembly, chromosome: 6 blastn 67 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
5522209 5522209 PRJNA408129_S_NODE_24645_length_167_cov_20.315385_g24627_i0 PRJNA408129 24645 167 20.315385 33.92669295 Polulichloris maxima 2704661 Plants Plants 244 2.15e-60   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g24627 i0 96.599 10.3173652694611 147 5 88 0 2 148 125451 125305 Polulichloris maxima clone L123 chloroplast, complete genome blastn 1723 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
6796102 6796102 PRJNA408129_S_NODE_15026_length_195_cov_5.626582_g15008_i0 PRJNA408129 15026 195 5.626582 10.9718349 Microspora stagnorum 163317 Plants Plants 141 3.5e-29   NTclustered gi|563940464|ref|NC_022862.1| 163317 g15008 i0 91.262 0.528205128205128 103 9 53 0 85 187 271 169 Microspora stagnorum culture-collection SAG:51.86 mitochondrion, complete genome blastn 103 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae   Microsporaceae Microspora Microspora stagnorum
9346605 9346605 PRJNA408129_S_NODE_31528_length_156_cov_1.411765_g31510_i0 PRJNA408129 31528 156 1.411765 2.2023534 Chlorella variabilis 554065 Plants Plants 152 1.23e-32   NTclustered gi|552809028|ref|XM_005842781.1| 554065 g31510 i0 84.868 11.3846153846154 152 21 97 2 6 156 299 449 Chlorella variabilis hypothetical protein (CHLNCDRAFT_37706) mRNA, complete cds blastn 1776 152 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
13172038 13172038 PRJNA408129_S_NODE_13031_length_204_cov_4.664671_g13013_i0 PRJNA408129 13031 204 4.664671 9.51592884 Auxenochlorella protothecoides 3075 Plants Plants 111 2.89e-20   NTclustered gi|760439244|ref|XM_011398389.1| 3075 g13013 i0 83.2 5.76960784313725 125 17 60 4 16 138 591 713 Auxenochlorella protothecoides 60S ribosomal protein L7-2 partial mRNA blastn 1177 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
13172103 13172103 PRJNA408129_S_NODE_19451_length_180_cov_4.216783_g19433_i0 PRJNA408129 19451 180 4.216783 7.5902094 Characiochloris acuminata 167768 Plants Plants 187 4.01e-43   NTclustered gi|959124528|ref|NC_028584.1| 167768 g19433 i0 87.805 117.605555555556 164 14 88 5 4 162 94109 93947 Characiochloris acuminata culture-collection SAG:31.95 chloroplast, complete genome blastn 21169 187 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Characiochloridaceae Characiochloris Characiochloris acuminata
13172141 13172141 PRJNA408129_S_NODE_2331_length_323_cov_8.500000_g2313_i0 PRJNA408129 2331 323 8.5 27.455 Nannochloris normandinae 926285 Plants Plants 553 6.819999999999998e-153   NTclustered gi|922575245|gb|JQ921007.1| 926285 g2313 i0 98.714 95.9009287925697 311 4 96 0 12 322 519 829 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 30976 553 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
14447198 14447198 PRJNA408129_S_NODE_10332_length_219_cov_12.758242_g10314_i0 PRJNA408129 10332 219 12.758242 27.94054998 uncultured Symbiochloris 2562465 Plants Plants 281 2.27e-71   NTclustered gi|2509725906|gb|OR042192.1| 2562465 g10314 i0 91.304 93.4063926940639 207 17 95 1 12 218 1017 1222 Uncultured Symbiochloris clone BW01 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20456 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Symbiochloris
14447346 14447346 PRJNA408129_S_NODE_27892_length_161_cov_8.709677_g27874_i0 PRJNA408129 27892 161 8.709677 14.02257997 Trebouxia aggregata 160068 Plants Plants 122 1.0099999999999999e-23   NTclustered gi|162134308|gb|EU123972.1| 160068 g27874 i0 89.583 0.596273291925466 96 10 60 0 2 97 7905 8000 Trebouxia aggregata strain SAG 219-1d J protein of photosystem II (psbJ), L protein of photosystem II (psbL), cytochrome b559 beta subunit of photosystem II (psbF), and cytochrome b559 alpha subunit of photosystem II (psbE) genes, complete cds; chloroplast blastn 96 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
16385127 16385127 PRJNA408129_S_NODE_18713_length_182_cov_5.572414_g18695_i0 PRJNA408129 18713 182 5.572414 10.14179348 root 1 Root_unresolved Root_unresolved 52.8 0.015   NTclustered gi|1008861523|ref|NC_029671.1| 31300 g18695 i0 100 2.15384615384615 28 0 15 0 149 176 3227 3254 Mychonastes homosphaera strain CAUP H6502 chloroplast, complete genome blastn 392 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Mychonastaceae Mychonastes Mychonastes homosphaera
24644793 24644793 PRJNA408129_S_NODE_24040_length_169_cov_2.227273_g24022_i0 PRJNA408129 24040 169 2.227273 3.76409137 Stichococcus bacillaris 37433 Plants Plants 292 7.64e-75   NTclustered gi|723457333|ref|NC_025527.1| 37433 g24022 i0 99.383 9.24852071005917 162 0 96 1 8 169 50344 50184 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 1563 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
25308871 25308871 PRJNA408129_S_NODE_17420_length_186_cov_7.228188_g17402_i0 PRJNA408129 17420 186 7.228188 13.44442968 Trebouxia 13786 Plants Plants 311 2.38e-80   NTclustered gi|2105087|emb|Z95381.1| 53268 g17402 i0 99.415 92.005376344086 171 1 92 0 16 186 132 302 T.arboricola 26S rRNA gene blastn 17113 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia arboricola
27154989 27154989 PRJNA408129_S_NODE_13362_length_203_cov_1.789157_g13344_i0 PRJNA408129 13362 203 1.789157 3.63198871 Chlorophyta 3041 Plants Plants 43.5 0.0117   NR ABQ81938.1 3116 g13344 i0 100 0.886699507389163 20 0 29.6 0 203 144 427 446 ABQ81938.1 elongation factor-1 alpha-like protein, partial [Ulva intestinalis] diamond 180 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva intestinalis
27296811 27296811 PRJNA408129_S_NODE_20683_length_177_cov_2.371429_g20665_i0 PRJNA408129 20683 177 2.371429 4.19742933 Monoraphidium neglectum 145388 Plants Plants 48.1 1.58e-4   NR XP_013900905.1 145388 g20665 i0 63.3 1.52542372881356 30 11 50.8 0 177 88 196 225 XP_013900905.1 40S ribosomal protein S3-1 [Monoraphidium neglectum] diamond 270 48.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
27360158 27360158 PRJNA408129_S_NODE_31423_length_156_cov_1.890756_g31405_i0 PRJNA408129 31423 156 1.890756 2.94957936 Trebouxia sp. C 2796353 Plants Plants 92.8 4.64e-23   NR KAL0039368.1 2905654 g31405 i0 87.8 1.86538461538462 49 6 94.2 0 2 148 44 92 KAL0039368.1 hypothetical protein WJX79_005033 [Trebouxia sp. C0005] diamond 291 92.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0005
27486351 27486351 PRJNA408129_S_NODE_32943_length_154_cov_1.632479_g32925_i0 PRJNA408129 32943 154 1.632479 2.51401766 Ulva flexuosa 83791 Plants Plants 74.3 8.08e-14   NR AZP40192.1 83791 g32925 i0 64.7 1.98701298701299 51 18 99.4 0 154 2 187 237 AZP40192.1 hypothetical protein [Ulva flexuosa] diamond 306 74.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva flexuosa
27676021 27676021 PRJNA408129_S_NODE_33944_length_152_cov_6.321739_g33926_i0 PRJNA408129 33944 152 6.321739 9.60904328 Prototheca wickerhamii 3111 Plants Plants 67.8 1.52e-11   NR KAK2079609.1 3111 g33926 i0 93.3 2.96052631578947 30 2 59.2 0 6 95 394 423 KAK2079609.1 hypothetical protein QBZ16_002004 [Prototheca wickerhamii] diamond 450 67.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
28496831 28496831 PRJNA408129_S_NODE_23547_length_170_cov_2.443609_g23529_i0 PRJNA408129 23547 170 2.443609 4.1541353 Monoraphidium minutum 39955 Plants Plants 63.2 8.61e-10   NR KAI8477130.1 39955 g23529 i0 81.6 0.670588235294118 38 7 67.1 0 158 45 548 585 KAI8477130.1 MAG: lysyl-tRNA synthetase, LysRS [Monoraphidium minutum] diamond 114 63.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
28749310 28749310 PRJNA408129_S_NODE_8987_length_228_cov_4.670157_g8969_i0 PRJNA408129 8987 228 4.670157 10.64795796 Coccomyxa subellipsoidea C-169 574566 Plants Plants 44.3 0.0085   NR XP_005643479.1 574566 g8969 i0 63.6 0.434210526315789 33 12 43.4 0 87 185 402 434 XP_005643479.1 Clavaminate synthase-like protein [Coccomyxa subellipsoidea C-169] diamond 99 44.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
29002330 29002330 PRJNA408129_S_NODE_4148_length_281_cov_2.942623_g4130_i0 PRJNA408129 4148 281 2.942623 8.26877063 Chlorella sorokiniana 3076 Plants Plants 75.1 2.51e-13   NR PRW05900.1 3076 g4130 i0 63.8 1.00355871886121 58 21 61.9 0 1 174 656 713 PRW05900.1 acetolactate synthase isoform A [Chlorella sorokiniana] diamond 282 75.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
29664570 29664570 PRJNA408129_S_NODE_19950_length_179_cov_2.387324_g19932_i0 PRJNA408129 19950 179 2.387324 4.27330996 Bryopsis sp. KO-2 3115439 Plants Plants 75.1 7.71e-16   NR GMH40780.1 3041901 g19932 i0 72.7 0.921787709497207 55 15 92.2 0 179 15 41 95 GMH40780.1 hypothetical protein BSKO_08684 [Bryopsis sp. KO-2023] diamond 165 75.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
29744481 29744481 PRJNA408129_S_NODE_20030_length_179_cov_1.570423_g20012_i0 PRJNA408129 20030 179 1.570423 2.81105717 Chlorophyta 3041 Plants Plants 49.3 5.1e-5   NR KAK9811451.1 41462 g20012 i0 73.3 3.5195530726257 30 8 50.3 0 2 91 175 204 KAK9811451.1 hypothetical protein WJX72_004104 [[Myrmecia] bisecta] diamond 630 49.7 0.991951710261569 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
30012496 30012496 PRJNA408129_S_NODE_15931_length_192_cov_1.548387_g15913_i0 PRJNA408129 15931 192 1.548387 2.97290304 Ulva pertusa 3120 Plants Plants 48.1 7.71e-5   NR AAT45616.1 3120 g15913 i0 74.1 0.84375 27 7 42.2 0 191 111 112 138 AAT45616.1 plastocyanin precursor [Ulva pertusa] diamond 162 48.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva pertusa
30360377 30360377 PRJNA408129_S_NODE_8252_length_234_cov_2.208122_g8234_i0 PRJNA408129 8252 234 2.208122 5.16700548 Acetabularia acetabulum 35845 Plants Plants 64.7 3.17e-10   NR DAA05905.1 35845 g8234 i0 87.1 1.16666666666667 31 4 39.7 0 4 96 223 253 DAA05905.1 TPA_inf: chloroplast light-harvesting complex II protein precursor Lhcbm12 [Acetabularia acetabulum] diamond 273 64.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Dasycladales Polyphysaceae Acetabularia Acetabularia acetabulum
30517878 30517878 PRJNA408129_S_NODE_34753_length_151_cov_5.280702_g34735_i0 PRJNA408129 34753 151 5.280702 7.97386002 [Myrmecia] bisecta 41462 Plants Plants 90.1 2.23e-21   NR KAK9811693.1 41462 g34735 i0 94 0.993377483443709 50 3 99.3 0 151 2 97 146 KAK9811693.1 hypothetical protein WJX72_008509 [[Myrmecia] bisecta] diamond 150 90.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
30897202 30897202 PRJNA408129_S_NODE_18574_length_183_cov_1.910959_g18556_i0 PRJNA408129 18574 183 1.910959 3.49705497 Symbiochloris irregularis 706552 Plants Plants 101 5.37e-24   NR KAK9806558.1 706552 g18556 i0 82.1 1.81967213114754 56 10 91.8 0 1 168 255 310 KAK9806558.1 hypothetical protein WJX73_000697 [Symbiochloris irregularis] diamond 333 101 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis
31023418 31023418 PRJNA408129_S_NODE_12375_length_208_cov_2.701754_g12357_i0 PRJNA408129 12375 208 2.701754 5.61964832 Sanguina aurantia 2578422 Plants Plants 45.1 0.00236   NR MEW5302222.1 2578422 g12357 i0 71.8 0.5625 39 9 56.3 2 2 118 140 176 MEW5302222.1 hypothetical protein [Sanguina aurantia] diamond 117 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Sanguina Sanguina aurantia
31117943 31117943 PRJNA408129_S_NODE_32795_length_154_cov_2.452991_g32777_i0 PRJNA408129 32795 154 2.452991 3.77760614 Dicloster acuatus 91190 Plants Plants 45.4 9.18e-4   NR YP_009106639.1 91190 g32777 i0 43.5 0.896103896103896 46 26 89.6 0 15 152 144 189 YP_009106639.1 putative site-specific DNA endonuclease [Dicloster acuatus] diamond 138 45.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
31687352 31687352 PRJNA408129_S_NODE_27157_length_163_cov_1.793651_g27139_i0 PRJNA408129 27157 163 1.793651 2.92365113 Raphidocelis subcapitata 307507 Plants Plants 81.6 5.51e-18   NR GBG00329.1 307507 g27139 i0 80.4 2.8159509202454 51 10 93.9 0 9 161 81 131 GBG00329.1 60S ribosomal protein L27a [Raphidocelis subcapitata] diamond 459 81.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
32541903 32541903 PRJNA408129_S_NODE_1599_length_349_cov_21.237179_g1581_i0 PRJNA408129 1599 349 21.237179 74.11775471 [Myrmecia] bisecta 41462 Plants Plants 66.6 1.41e-11   NR KAK9814105.1 41462 g1581 i0 56.9 0.498567335243553 58 25 49.9 0 22 195 4 61 KAK9814105.1 hypothetical protein WJX72_000742 [[Myrmecia] bisecta] diamond 174 66.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;