RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA408129", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA408129 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11897366 11897366 PRJNA408129_S_NODE_4130_length_281_cov_4.659836_g4112_i0 PRJNA408129 4130 281 4.659836 13.09413916 Pseudomonadati 3379134 Bacteria Bacteria 100 2.15e-22   NR MFP4070214.1 2026772 g4112 i0 83.9 2.41281138790036 56 9 59.8 0 280 113 692 747 MFP4070214.1 catalase/peroxidase HPI [Opitutales bacterium] diamond 678 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
27360155 27360155 PRJNA408129_S_NODE_23643_length_170_cov_1.571429_g23625_i0 PRJNA408129 23643 170 1.571429 2.6714293 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 91.3 1.11e-19   NR MES2920926.1 2026799 g23625 i0 83.6 0.970588235294118 55 9 97.1 0 170 6 170 224 MES2920926.1 carboxy terminal-processing peptidase [Verrucomicrobiota bacterium] diamond 165 91.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32715810 32715810 PRJNA408129_S_NODE_29160_length_159_cov_5.122951_g29142_i0 PRJNA408129 29160 159 5.122951 8.14549209 Pseudomonadati 3379134 Bacteria Bacteria 90.9 1.83e-20   NR MBV8226507.1 2026799 g29142 i0 78.8 3.84905660377358 52 11 98.1 0 157 2 91 142 MBV8226507.1 cysteine hydrolase [Verrucomicrobiota bacterium] diamond 612 90.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;