RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA408129", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA408129 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28970364 28970364 PRJNA408129_S_NODE_33508_length_153_cov_2.517241_g33490_i0 PRJNA408129 33508 153 2.517241 3.85137873 Neochlamydia sp. S13 1353976 Bacteria Bacteria 75.1 2.25e-14   NR WP_042241681.1 1353976 g33490 i0 66 0.980392156862745 50 17 98 0 153 4 110 159 WP_042241681.1 archaetidylserine decarboxylase [Neochlamydia sp. S13] diamond 150 75.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. S13
30517871 30517871 PRJNA408129_S_NODE_11013_length_215_cov_6.825843_g10995_i0 PRJNA408129 11013 215 6.825843 14.67556245 Chlamydia ibidis 1405396 Bacteria Bacteria 50.4 3.76e-6   NR EPP34943.1 1405396 g10995 i0 88.5 0.362790697674419 26 3 36.3 0 209 132 40 65 EPP34943.1 hypothetical protein CP10139811_1560, partial [Chlamydia ibidis] diamond 78 50.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia ibidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;