contig_metadata
26 rows where bioproject = "PRJNA408129" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 418304 | 418304 | PRJNA408129_S_NODE_14281_length_198_cov_7.875776_g14263_i0 | PRJNA408129 | 14281 | 198 | 7.875776 | 15.59403648 | Blastopirellula sp. J2-11 | 2943192 | Bacteria | Bacteria | 196 | 7.49e-46 | NTclustered | gi|2283101653|gb|CP097384.1| | 2943192 | g14263 | i0 | 86.592 | 83.8232323232323 | 179 | 23 | 90 | 1 | 1 | 179 | 2919618 | 2919795 | Blastopirellula sp. J2-11 chromosome | blastn | 16597 | 196 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Blastopirellula | Blastopirellula sp. J2-11 | |
| 418417 | 418417 | PRJNA408129_S_NODE_25001_length_167_cov_2.076923_g24983_i0 | PRJNA408129 | 25001 | 167 | 2.076923 | 3.46846141 | uncultured Planctomycetaceae bacterium | 100233 | Bacteria | Bacteria | 182 | 1.71e-41 | NTclustered | gi|2874253757|emb|OY969698.1| | 100233 | g24983 | i0 | 88.235 | 2.4311377245509 | 153 | 17 | 92 | 1 | 15 | 167 | 4422876 | 4422725 | MAG: uncultured Planctomycetaceae bacterium isolate MFD00082.bin.2.56 genome assembly, chromosome: 1 | blastn | 406 | 182 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | uncultured Planctomycetaceae bacterium | ||
| 4910748 | 4910748 | PRJNA408129_S_NODE_28564_length_160_cov_5.024390_g28546_i0 | PRJNA408129 | 28564 | 160 | 5.02439 | 8.039024 | Singulisphaera | 466152 | Bacteria | Bacteria | 237 | 3.4100000000000004e-58 | NTclustered | gi|2732846650|gb|CP155447.1| | 3120278 | g28546 | i0 | 95.918 | 118.375 | 147 | 5 | 91 | 1 | 8 | 153 | 2272039 | 2271893 | Singulisphaera sp. Ch08 chromosome, complete genome | blastn | 18940 | 237 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Singulisphaera | Singulisphaera sp. Ch08 | |
| 6796351 | 6796351 | PRJNA408129_S_NODE_9846_length_222_cov_8.356757_g9828_i0 | PRJNA408129 | 9846 | 222 | 8.356757 | 18.55200054 | Aureliella helgolandensis | 2527968 | Bacteria | Bacteria | 254 | 5.03e-63 | NTclustered | gi|1712701923|gb|CP036298.1| | 2527968 | g9828 | i0 | 89.848 | 13.1621621621622 | 197 | 20 | 89 | 0 | 14 | 210 | 6999007 | 6998811 | Aureliella helgolandensis strain Q31a chromosome, complete genome | blastn | 2922 | 254 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Aureliella | Aureliella helgolandensis | |
| 7460670 | 7460670 | PRJNA408129_S_NODE_26286_length_164_cov_4.716535_g26268_i0 | PRJNA408129 | 26286 | 164 | 4.716535 | 7.7351174 | Frigoriglobus | 2774146 | Bacteria | Bacteria | 217 | 4.589999999999999e-52 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g26268 | i0 | 92.157 | 28.3170731707317 | 153 | 12 | 93 | 0 | 5 | 157 | 2001782 | 2001630 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 4644 | 217 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 8071674 | 8071674 | PRJNA408129_S_NODE_21007_length_176_cov_2.712230_g20989_i0 | PRJNA408129 | 21007 | 176 | 2.71223 | 4.7735248 | Pirellulimonas nuda | 2528009 | Bacteria | Bacteria | 150 | 5.12e-32 | NTclustered | gi|1712662089|gb|CP036291.1| | 2528009 | g20989 | i0 | 83.234 | 3.60795454545455 | 167 | 24 | 94 | 4 | 5 | 169 | 4534752 | 4534916 | Pirellulimonas nuda strain Pla175 chromosome, complete genome | blastn | 635 | 150 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Pirellulimonas | Pirellulimonas nuda | |
| 10622361 | 10622361 | PRJNA408129_S_NODE_3029_length_303_cov_21289.229323_g3011_i0 | PRJNA408129 | 3029 | 303 | 21289.229323 | 64506.36484869 | Lacipirellula parvula | 2650471 | Bacteria | Bacteria | 268 | 2.57e-67 | NTclustered | gi|1761017769|dbj|AP021861.1| | 2650471 | g3011 | i0 | 90.64 | 36.1980198019802 | 203 | 18 | 67 | 1 | 14 | 215 | 5164240 | 5164038 | Lacipirellula parvula PX69 DNA, complete genome | blastn | 10968 | 268 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Lacipirellula | Lacipirellula parvula | |
| 11897366 | 11897366 | PRJNA408129_S_NODE_4130_length_281_cov_4.659836_g4112_i0 | PRJNA408129 | 4130 | 281 | 4.659836 | 13.09413916 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 100 | 2.15e-22 | NR | MFP4070214.1 | 2026772 | g4112 | i0 | 83.9 | 2.41281138790036 | 56 | 9 | 59.8 | 0 | 280 | 113 | 692 | 747 | MFP4070214.1 catalase/peroxidase HPI [Opitutales bacterium] | diamond | 678 | 100 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutales bacterium | |||
| 13172014 | 13172014 | PRJNA408129_S_NODE_10651_length_217_cov_54.522222_g10633_i0 | PRJNA408129 | 10651 | 217 | 54.522222 | 118.31322174 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 237 | 4.93e-58 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g10633 | i0 | 89.73 | 6.29953917050691 | 185 | 19 | 85 | 0 | 15 | 199 | 7050393 | 7050209 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 1367 | 237 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 14447294 | 14447294 | PRJNA408129_S_NODE_20812_length_176_cov_13.028777_g20794_i0 | PRJNA408129 | 20812 | 176 | 13.028777 | 22.93064752 | Anatilimnocola aggregata | 2528021 | Bacteria | Bacteria | 196 | 6.479999999999999e-46 | NTclustered | gi|1712591889|gb|CP036274.1| | 2528021 | g20794 | i0 | 88.024 | 5.02840909090909 | 167 | 18 | 94 | 2 | 11 | 176 | 7631081 | 7630916 | Anatilimnocola aggregata strain ETA_A8 chromosome, complete genome | blastn | 885 | 196 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Anatilimnocola | Anatilimnocola aggregata | |
| 18270050 | 18270050 | PRJNA408129_S_NODE_25195_length_166_cov_6.930233_g25177_i0 | PRJNA408129 | 25195 | 166 | 6.930233 | 11.50418678 | Polystyrenella longa | 2528007 | Bacteria | Bacteria | 145 | 2.23e-30 | NTclustered | gi|1712652806|gb|CP036281.1| | 2528007 | g25177 | i0 | 90.09 | 88.2228915662651 | 111 | 11 | 67 | 0 | 11 | 121 | 1415482 | 1415592 | Polystyrenella longa strain Pla110 chromosome, complete genome | blastn | 14645 | 145 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Polystyrenella | Polystyrenella longa | |
| 19544292 | 19544292 | PRJNA408129_S_NODE_31276_length_156_cov_2.655462_g31258_i0 | PRJNA408129 | 31276 | 156 | 2.655462 | 4.14252072 | Lacipirellula parvula | 2650471 | Bacteria | Bacteria | 105 | 3.63e-25 | NR | WP_152100837.1 | 2650471 | g31258 | i0 | 98 | 0.980769230769231 | 51 | 1 | 98.1 | 0 | 155 | 3 | 98 | 148 | WP_152100837.1 hypothetical protein [Lacipirellula parvula] | diamond | 153 | 105 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Lacipirellula | Lacipirellula parvula | |
| 26648842 | 26648842 | PRJNA408129_S_NODE_7581_length_239_cov_6.257426_g7563_i0 | PRJNA408129 | 7581 | 239 | 6.257426 | 14.95524814 | Paludisphaera | 1763521 | Bacteria | Bacteria | 51.6 | 2.62e-5 | NR | WP_277862173.1 | 3030827 | g7563 | i0 | 48.9 | 1.09205020920502 | 45 | 23 | 56.5 | 0 | 187 | 53 | 515 | 559 | WP_277862173.1 Ig-like domain repeat protein [Paludisphaera mucosa] | diamond | 261 | 52 | 0.992307692307692 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Paludisphaera | Paludisphaera mucosa | |
| 27360155 | 27360155 | PRJNA408129_S_NODE_23643_length_170_cov_1.571429_g23625_i0 | PRJNA408129 | 23643 | 170 | 1.571429 | 2.6714293 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 91.3 | 1.11e-19 | NR | MES2920926.1 | 2026799 | g23625 | i0 | 83.6 | 0.970588235294118 | 55 | 9 | 97.1 | 0 | 170 | 6 | 170 | 224 | MES2920926.1 carboxy terminal-processing peptidase [Verrucomicrobiota bacterium] | diamond | 165 | 91.3 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 28149497 | 28149497 | PRJNA408129_S_NODE_28085_length_161_cov_3.524194_g28067_i0 | PRJNA408129 | 28085 | 161 | 3.524194 | 5.67395234 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 41.6 | 0.0147 | NR | MEQ8765592.1 | 2026780 | g28067 | i0 | 40 | 0.838509316770186 | 45 | 27 | 83.9 | 0 | 9 | 143 | 35 | 79 | MEQ8765592.1 DUF4405 domain-containing protein [Planctomycetota bacterium] | diamond | 135 | 41.6 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 28623143 | 28623143 | PRJNA408129_S_NODE_27047_length_163_cov_2.388889_g27029_i0 | PRJNA408129 | 27047 | 163 | 2.388889 | 3.89388907 | Paludisphaera borealis | 1387353 | Bacteria | Bacteria | 66.6 | 4.54e-11 | NR | WP_083713394.1 | 1387353 | g27029 | i0 | 82.5 | 2.5398773006135 | 40 | 7 | 73.6 | 0 | 39 | 158 | 23 | 62 | WP_083713394.1 amidohydrolase [Paludisphaera borealis] | diamond | 414 | 66.6 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Paludisphaera | Paludisphaera borealis | |
| 28970364 | 28970364 | PRJNA408129_S_NODE_33508_length_153_cov_2.517241_g33490_i0 | PRJNA408129 | 33508 | 153 | 2.517241 | 3.85137873 | Neochlamydia sp. S13 | 1353976 | Bacteria | Bacteria | 75.1 | 2.25e-14 | NR | WP_042241681.1 | 1353976 | g33490 | i0 | 66 | 0.980392156862745 | 50 | 17 | 98 | 0 | 153 | 4 | 110 | 159 | WP_042241681.1 archaetidylserine decarboxylase [Neochlamydia sp. S13] | diamond | 150 | 75.1 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Neochlamydia | Neochlamydia sp. S13 | |
| 29727807 | 29727807 | PRJNA408129_S_NODE_33970_length_152_cov_5.626087_g33952_i0 | PRJNA408129 | 33970 | 152 | 5.626087 | 8.55165224 | Planctomycetaceae bacterium | 2026779 | Bacteria | Bacteria | 74.7 | 5.64e-14 | NR | MFP6764688.1 | 2026779 | g33952 | i0 | 73.3 | 6.21710526315789 | 45 | 12 | 88.8 | 0 | 2 | 136 | 271 | 315 | MFP6764688.1 AAA family ATPase [Planctomycetaceae bacterium] | diamond | 945 | 74.7 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Planctomycetaceae bacterium | ||
| 30517871 | 30517871 | PRJNA408129_S_NODE_11013_length_215_cov_6.825843_g10995_i0 | PRJNA408129 | 11013 | 215 | 6.825843 | 14.67556245 | Chlamydia ibidis | 1405396 | Bacteria | Bacteria | 50.4 | 3.76e-6 | NR | EPP34943.1 | 1405396 | g10995 | i0 | 88.5 | 0.362790697674419 | 26 | 3 | 36.3 | 0 | 209 | 132 | 40 | 65 | EPP34943.1 hypothetical protein CP10139811_1560, partial [Chlamydia ibidis] | diamond | 78 | 50.4 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Chlamydiales | Chlamydiaceae | Chlamydia | Chlamydia ibidis | |
| 30770801 | 30770801 | PRJNA408129_S_NODE_20314_length_178_cov_2.226950_g20296_i0 | PRJNA408129 | 20314 | 178 | 2.22695 | 3.963971 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 43.5 | 0.0084 | NR | MEC8651550.1 | 2026780 | g20296 | i0 | 38 | 0.842696629213483 | 50 | 31 | 84.3 | 0 | 7 | 156 | 182 | 231 | MEC8651550.1 hypothetical protein [Planctomycetota bacterium] | diamond | 150 | 43.5 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 31845449 | 31845449 | PRJNA408129_S_NODE_31637_length_155_cov_10.423729_g31619_i0 | PRJNA408129 | 31637 | 155 | 10.423729 | 16.15677995 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 45.8 | 7.27e-4 | NR | HZV01369.1 | 2026780 | g31619 | i0 | 53.8 | 0.754838709677419 | 39 | 18 | 75.5 | 0 | 149 | 33 | 170 | 208 | HZV01369.1 hypothetical protein [Planctomycetota bacterium] | diamond | 117 | 45.8 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 31893841 | 31893841 | PRJNA408129_S_NODE_14197_length_199_cov_2.549383_g14179_i0 | PRJNA408129 | 14197 | 199 | 2.549383 | 5.07327217 | Planctomycetia | 203683 | Bacteria | Bacteria | 102 | 1.1199999999999999e-23 | NR | WP_148074061.1 | 1400387 | g14179 | i0 | 74.2 | 9.30150753768844 | 62 | 16 | 93.5 | 0 | 6 | 191 | 376 | 437 | WP_148074061.1 sodium-dependent transporter [Bythopirellula goksoeyrii] | diamond | 1851 | 102 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Bythopirellula | Bythopirellula goksoeyrii | |
| 32003836 | 32003836 | PRJNA408129_S_NODE_14318_length_198_cov_5.062112_g14300_i0 | PRJNA408129 | 14318 | 198 | 5.062112 | 10.02298176 | Pirellulales bacterium | 2715253 | Bacteria | Bacteria | 63.9 | 6.88e-10 | NR | HZZ28781.1 | 2715253 | g14300 | i0 | 60 | 0.909090909090909 | 60 | 24 | 90.9 | 0 | 197 | 18 | 269 | 328 | HZZ28781.1 autotransporter-associated beta strand repeat-containing protein [Pirellulales bacterium] | diamond | 180 | 63.9 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulales bacterium | |||
| 32415233 | 32415233 | PRJNA408129_S_NODE_26559_length_164_cov_2.094488_g26541_i0 | PRJNA408129 | 26559 | 164 | 2.094488 | 3.43496032 | Planctomycetia bacterium | 2052181 | Bacteria | Bacteria | 42.7 | 0.00378 | NR | MBI2481475.1 | 2052181 | g26541 | i0 | 50 | 0.658536585365854 | 36 | 18 | 65.9 | 0 | 116 | 9 | 7 | 42 | MBI2481475.1 hypothetical protein [Planctomycetia bacterium] | diamond | 108 | 42.7 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetia bacterium | ||||
| 32431867 | 32431867 | PRJNA408129_S_NODE_18459_length_183_cov_3.143836_g18441_i0 | PRJNA408129 | 18459 | 183 | 3.143836 | 5.75321988 | PVC group | 1783257 | Bacteria | Bacteria | 51.6 | 1.29e-5 | NR | HMC66185.1 | 2052164 | g18441 | i0 | 100 | 6.95081967213115 | 25 | 0 | 41 | 0 | 174 | 100 | 457 | 481 | HMC66185.1 DNA-directed RNA polymerase subunit beta' [Gemmataceae bacterium] | diamond | 1272 | 51.6 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmataceae bacterium | ||
| 32715810 | 32715810 | PRJNA408129_S_NODE_29160_length_159_cov_5.122951_g29142_i0 | PRJNA408129 | 29160 | 159 | 5.122951 | 8.14549209 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 90.9 | 1.83e-20 | NR | MBV8226507.1 | 2026799 | g29142 | i0 | 78.8 | 3.84905660377358 | 52 | 11 | 98.1 | 0 | 157 | 2 | 91 | 142 | MBV8226507.1 cysteine hydrolase [Verrucomicrobiota bacterium] | diamond | 612 | 90.9 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;