RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA407886", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

  • Pisuviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407886 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2967939 2967939 PRJNA407886_P_NODE_31303_length_406_cov_1.204204_g29609_i0 PRJNA407886 31303 406 1.204204 4.88906824 Potyvirus phaseovulgaris 3240595 Viruses Viruses 750 0   NTclustered gi|339905491|gb|HM776067.1| 28353 g29609 i0 100 100 406 0 100 0 1 406 501 906 Bean common mosaic virus strain peanut stripe isolate DY2 polyprotein gene, partial cds blastn 40600 750 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus phaseovulgaris
13171643 13171643 PRJNA407886_P_NODE_66571_length_258_cov_1.372973_g64877_i0 PRJNA407886 66571 258 1.372973 3.54227034 Potyvirus phaseovulgaris 3240595 Viruses Viruses 466 7.08e-127   NTclustered gi|2129411261|gb|MZ442684.1| 28353 g64877 i0 99.225 75.9922480620155 258 2 100 0 1 258 5847 5590 Peanut stripe virus isolate AYD-9 polyprotein gene, complete cds blastn 19606 466 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus phaseovulgaris
23369690 23369690 PRJNA407886_P_NODE_53379_length_293_cov_1.700000_g51685_i0 PRJNA407886 53379 293 1.7 4.981 Potyvirus phaseovulgaris 3240595 Viruses Viruses 542 1.32e-149   NTclustered gi|1935608368|gb|MN786956.1| 12196 g51685 i0 100 99.5870307167235 293 0 100 0 1 293 8054 7762 Bean common mosaic virus isolate SY-Peanut polyprotein gene, complete cds blastn 29179 542 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus phaseovulgaris
30328773 30328773 PRJNA407886_P_NODE_28172_length_437_cov_0.967033_g26479_i0 PRJNA407886 28172 437 0.967033 4.22593421 Papaver atlanticum amalgavirus 1 2982061 Viruses Viruses 133 7.72e-33   NR DAZ91037.1 2982061 g26479 i0 45.1 1.97711670480549 144 79 98.9 0 433 2 25 168 DAZ91037.1 TPA_asm: fusion protein [Papaver atlanticum amalgavirus 1] diamond 864 133 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Amalgaviridae Amalgavirus Papaver atlanticum amalgavirus 1
31972060 31972060 PRJNA407886_P_NODE_74238_length_247_cov_1.206897_g72544_i0 PRJNA407886 74238 247 1.206897 2.98103559 Myosoton aquaticum amalgavirus 2 2982058 Viruses Viruses 65.1 4.86e-10   NR DAZ91024.1 2982058 g72544 i0 46.2 1.89473684210526 78 39 91.1 2 243 19 253 330 DAZ91024.1 TPA_asm: hypothetical protein [Myosoton aquaticum amalgavirus 2] diamond 468 65.1 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Amalgaviridae Amalgavirus Myosoton aquaticum amalgavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;