RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA407886", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407886 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28686375 28686375 PRJNA407886_P_NODE_72427_length_249_cov_0.875000_g70733_i0 PRJNA407886 72427 249 0.875 2.17875 Candidatus Nitrosocosmicus sp. 2109671 Archaea Archaea 62.8 5.47e-10   NR MDN5846325.1 2109671 g70733 i0 58.7 1.10843373493976 46 19 55.4 0 247 110 106 151 MDN5846325.1 6-bladed beta-propeller [Candidatus Nitrosocosmicus sp.] diamond 276 62.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus sp.
32193666 32193666 PRJNA407886_P_NODE_69618_length_251_cov_1.297753_g67924_i0 PRJNA407886 69618 251 1.297753 3.25736003 Nitrosarchaeum sp. 2026886 Archaea Archaea 115 7.09e-28   NR MFB5612793.1 2026886 g67924 i0 68.7 0.99203187250996006 83 26 99.2 0 2 250 508 590 MFB5612793.1 molecular chaperone DnaK [Nitrosarchaeum sp.] diamond 249 115 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;