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contig_metadata

28 rows where bioproject = "PRJNA407886", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 28 ✖

tax_phylum 1

  • Myxococcota · 28 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407886 · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2358075 2358075 PRJNA407886_P_NODE_79842_length_242_cov_1.781065_g78148_i0 PRJNA407886 79842 242 1.781065 4.3101773 Sandaracinus 1055688 Bacteria Bacteria 121 1.04e-32   NR MFO0685325.1 2024858 g78148 i0 73.2 11.4917355371901 71 19 88 0 14 226 62 132 MFO0685325.1 superoxide dismutase [Sandaracinus sp.] diamond 2781 122 0.991803278688525 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.
5521845 5521845 PRJNA407886_P_NODE_73205_length_248_cov_0.880000_g71511_i0 PRJNA407886 73205 248 0.88 2.1824 Corallococcus sp. NCRR 2996782 Bacteria Bacteria 87.9 6.15e-13   NTclustered gi|2415015785|gb|CP114039.1| 2996782 g71511 i0 83.696 1.19758064516129 92 15 37 0 20 111 9443839 9443748 Corallococcus sp. NCRR chromosome, complete genome blastn 297 87.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. NCRR
13171897 13171897 PRJNA407886_P_NODE_79791_length_242_cov_1.822485_g78097_i0 PRJNA407886 79791 242 1.822485 4.4104137 Myxococcaceae bacterium 2484252 Bacteria Bacteria 150 4.39e-42   NR RYZ13579.1 2484252 g78097 i0 92.5 0.991735537190083 80 6 99.2 0 2 241 184 263 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 240 150 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
21484146 21484146 PRJNA407886_P_NODE_60857_length_272_cov_1.482412_g59163_i0 PRJNA407886 60857 272 1.482412 4.03216064 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 86.7 8.95e-18   NR MCC7107856.1 2026735 g59163 i0 80 1.10294117647059 50 10 55.1 0 2 151 302 351 MCC7107856.1 helix-turn-helix transcriptional regulator [Deltaproteobacteria bacterium] diamond 300 86.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27328475 27328475 PRJNA407886_P_NODE_32503_length_396_cov_1.430341_g30809_i0 PRJNA407886 32503 396 1.430341 5.66415036 Archangium gephyra 48 Bacteria Bacteria 50.4 1.8e-4   NR WP_375765066.1 48 g30809 i0 43.8 0.484848484848485 64 32 45.5 1 216 395 4 67 WP_375765066.1 hypothetical protein [Archangium gephyra] diamond 192 50.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
27376940 27376940 PRJNA407886_P_NODE_51703_length_298_cov_2.048889_g50009_i0 PRJNA407886 51703 298 2.048889 6.10568922 Bacteria 2 Bacteria Bacteria 51.6 5.76e-5   NR MBT6489693.1 2026735 g50009 i0 46.2 5.85906040268456 52 23 47.3 2 7 147 1544 1595 MBT6489693.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1746 52 0.992307692307692 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27391761 27391761 PRJNA407886_P_NODE_72003_length_249_cov_0.875000_g70309_i0 PRJNA407886 72003 249 0.875 2.17875 Kofleriaceae bacterium 2212474 Bacteria Bacteria 113 6.590000000000001e-27   NR MBP9863556.1 2212474 g70309 i0 65.4 0.975903614457831 81 28 97.6 0 6 248 754 834 MBP9863556.1 hypothetical protein [Kofleriaceae bacterium] diamond 243 113 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27580952 27580952 PRJNA407886_P_NODE_70024_length_251_cov_0.865169_g68330_i0 PRJNA407886 70024 251 0.865169 2.17157419 Polyangiales bacterium 3034171 Bacteria Bacteria 80.9 1.53e-15   NR MFO0692638.1 3034171 g68330 i0 43.2 0.968127490039841 81 46 96.8 0 244 2 344 424 MFO0692638.1 hypothetical protein [Polyangiales bacterium] diamond 243 80.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27928331 27928331 PRJNA407886_P_NODE_36125_length_369_cov_2.398649_g34431_i0 PRJNA407886 36125 369 2.398649 8.85101481 Myxococcaceae bacterium 2484252 Bacteria Bacteria 189 3.1199999999999996e-56   NR RYZ13579.1 2484252 g34431 i0 75.6 1 123 30 100 0 1 369 66 188 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 369 189 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28008324 28008324 PRJNA407886_P_NODE_52785_length_295_cov_1.382883_g51091_i0 PRJNA407886 52785 295 1.382883 4.07950485 Archangium 47 Bacteria Bacteria 58.5 2.02e-7   NR MFT3708381.1 1872627 g51091 i0 43.4 2.89830508474576 106 45 96.6 7 289 5 766 867 MFT3708381.1 hypothetical protein [Archangium sp.] diamond 855 58.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28307245 28307245 PRJNA407886_P_NODE_49486_length_306_cov_1.433476_g47792_i0 PRJNA407886 49486 306 1.433476 4.38643656 Polyangiaceae bacterium 2268199 Bacteria Bacteria 45.8 0.0065   NR HVJ14492.1 2268199 g47792 i0 32 0.735294117647059 75 42 68.6 3 74 283 92 162 HVJ14492.1 beta-propeller domain-containing protein [Polyangiaceae bacterium] diamond 225 45.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28843808 28843808 PRJNA407886_P_NODE_71348_length_250_cov_0.870056_g69654_i0 PRJNA407886 71348 250 0.870056 2.17514 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52 2.31e-5   NR MCC6623602.1 2026735 g69654 i0 38.5 0.936 78 36 82.8 3 7 213 460 534 MCC6623602.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 234 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28875547 28875547 PRJNA407886_P_NODE_58528_length_278_cov_1.829268_g56834_i0 PRJNA407886 58528 278 1.829268 5.08536504 Myxococcaceae bacterium 2484252 Bacteria Bacteria 160 9.91e-46   NR RYZ13579.1 2484252 g56834 i0 85.9 0.992805755395683 92 13 99.3 0 276 1 297 388 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 276 160 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29002317 29002317 PRJNA407886_P_NODE_81428_length_241_cov_0.916667_g79734_i0 PRJNA407886 81428 241 0.916667 2.20916747 Myxococcota bacterium 2818507 Bacteria Bacteria 42.4 0.0479   NR MES2504807.1 2818507 g79734 i0 33.3 0.634854771784232 51 31 63.5 2 77 229 144 191 MES2504807.1 hypothetical protein [Myxococcota bacterium] diamond 153 42.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29506973 29506973 PRJNA407886_P_NODE_81370_length_241_cov_0.916667_g79676_i0 PRJNA407886 81370 241 0.916667 2.20916747 Myxococcales bacterium 2026763 Bacteria Bacteria 89 2.12e-19   NR MBL8683519.1 2026763 g79676 i0 57.4 1.73029045643154 61 26 75.9 0 4 186 70 130 MBL8683519.1 fatty acid desaturase family protein [Myxococcales bacterium] diamond 417 89 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29696087 29696087 PRJNA407886_P_NODE_57850_length_280_cov_1.487923_g56156_i0 PRJNA407886 57850 280 1.487923 4.1661844 Myxococcota bacterium 2818507 Bacteria Bacteria 59.3 8.56e-8   NR MED5463341.1 2818507 g56156 i0 46 0.675 63 31 67.5 1 240 52 171 230 MED5463341.1 5'-nucleotidase C-terminal domain-containing protein [Myxococcota bacterium] diamond 189 59.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29759504 29759504 PRJNA407886_P_NODE_78531_length_243_cov_2.452941_g76837_i0 PRJNA407886 78531 243 2.452941 5.96064663 Myxococcales bacterium 2026763 Bacteria Bacteria 87.8 2.14e-18   NR MCA9578702.1 2026763 g76837 i0 59.8 3.02469135802469 82 31 100 2 1 243 82 162 MCA9578702.1 oxaloacetate-decarboxylating malate dehydrogenase [Myxococcales bacterium] diamond 735 87.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29807773 29807773 PRJNA407886_P_NODE_63271_length_266_cov_1.196891_g61577_i0 PRJNA407886 63271 266 1.196891 3.18373006 Bacteria 2 Bacteria Bacteria 105 3.12e-24   NR MCB9639759.1 2026763 g61577 i0 58.8 2.93233082706767 85 35 95.9 0 11 265 891 975 MCB9639759.1 NAD-glutamate dehydrogenase [Myxococcales bacterium] diamond 780 105 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29997544 29997544 PRJNA407886_P_NODE_32791_length_393_cov_2.615625_g31097_i0 PRJNA407886 32791 393 2.615625 10.27940625 Pseudomonadati 3379134 Bacteria Bacteria 76.6 1.19e-14   NR MBN2468948.1 2026735 g31097 i0 47.1 3.88549618320611 85 39 64.9 1 389 135 77 155 MBN2468948.1 Hsp20/alpha crystallin family protein [Deltaproteobacteria bacterium] diamond 1527 76.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30075413 30075413 PRJNA407886_P_NODE_82032_length_241_cov_0.916667_g80338_i0 PRJNA407886 82032 241 0.916667 2.20916747 Myxococcales bacterium 2026763 Bacteria Bacteria 67 1e-10   NR HAA54013.1 2026763 g80338 i0 48.7 5.850622406639 78 37 94.6 2 236 9 867 943 HAA54013.1 hypothetical protein [Myxococcales bacterium] diamond 1410 67 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30170153 30170153 PRJNA407886_P_NODE_58952_length_277_cov_1.500000_g57258_i0 PRJNA407886 58952 277 1.5 4.155 Polyangia bacterium 3058050 Bacteria Bacteria 57.4 3.97e-7   NR HLK93526.1 3058050 g57258 i0 40.5 0.8014440433213 74 39 75.8 2 14 223 110 182 HLK93526.1 hypothetical protein [Polyangia bacterium] diamond 222 57.4 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
30170172 30170172 PRJNA407886_P_NODE_80052_length_242_cov_1.266272_g78358_i0 PRJNA407886 80052 242 1.266272 3.06437824 Aetherobacter fasciculatus 888830 Bacteria Bacteria 42.4 0.0402   NR WP_346367567.1 888830 g78358 i0 46.9 0.607438016528926 49 25 59.5 1 235 92 116 164 WP_346367567.1 hypothetical protein [Aetherobacter fasciculatus] diamond 147 42.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Aetherobacter Aetherobacter fasciculatus
30201602 30201602 PRJNA407886_P_NODE_14932_length_722_cov_2.869029_g13338_i0 PRJNA407886 14932 722 2.869029 20.71438938 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 91.7 1.61e-17   NR MBI4776311.1 2026735 g13338 i0 34.1 0.889196675900277 214 119 84.8 8 90 701 167 368 MBI4776311.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 642 91.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30297187 30297187 PRJNA407886_P_NODE_79932_length_242_cov_1.526627_g78238_i0 PRJNA407886 79932 242 1.526627 3.69443734 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 65.5 3.71e-10   NR MCC6623667.1 2026735 g78238 i0 52.5 0.731404958677686 59 27 73.1 1 185 9 3502 3559 MCC6623667.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 177 65.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31212481 31212481 PRJNA407886_P_NODE_20035_length_570_cov_2.006036_g18352_i0 PRJNA407886 20035 570 2.006036 11.4344052 Polyangiales bacterium 3034171 Bacteria Bacteria 159 1.77e-42   NR MFO0696186.1 3034171 g18352 i0 51.4 0.973684210526316 185 88 96.8 2 557 6 79 262 MFO0696186.1 discoidin domain-containing protein [Polyangiales bacterium] diamond 555 159 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
31307751 31307751 PRJNA407886_P_NODE_66435_length_258_cov_1.664865_g64741_i0 PRJNA407886 66435 258 1.664865 4.2953517 Myxococcota bacterium 2818507 Bacteria Bacteria 51.6 3.59e-5   NR MEW5847593.1 2818507 g64741 i0 36.3 0.930232558139535 80 47 93 2 4 243 846 921 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 240 51.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32320480 32320480 PRJNA407886_P_NODE_29599_length_422_cov_1.521490_g27906_i0 PRJNA407886 29599 422 1.52149 6.4206878 Myxococcota bacterium 2818507 Bacteria Bacteria 50.8 3.26e-4   NR MEC9464894.1 2818507 g27906 i0 34.8 0.632701421800948 89 47 61.8 4 353 93 106 185 MEC9464894.1 hypothetical protein [Myxococcota bacterium] diamond 267 50.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32478595 32478595 PRJNA407886_P_NODE_70239_length_251_cov_0.865169_g68545_i0 PRJNA407886 70239 251 0.865169 2.17157419 Polyangiaceae bacterium 2268199 Bacteria Bacteria 121 5.019999999999999e-31   NR HEX4516865.1 2268199 g68545 i0 63.9 6.94422310756972 83 30 99.2 0 250 2 101 183 HEX4516865.1 methyltransferase domain-containing protein [Polyangiaceae bacterium] diamond 1743 121 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;