RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA407886", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA407886 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15110219 15110219 PRJNA407886_P_NODE_65952_length_259_cov_1.763441_g64258_i0 PRJNA407886 65952 259 1.763441 4.56731219 Helicobacter 209 Bacteria Bacteria 56.5 0.002   NTclustered gi|2637608581|gb|CP140483.1| 210 g64258 i0 97.059 0.505791505791506 34 0 13 1 160 192 622687 622720 Helicobacter pylori strain 51N chromosome, complete genome blastn 131 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
16995628 16995628 PRJNA407886_P_NODE_79414_length_243_cov_0.905882_g77720_i0 PRJNA407886 79414 243 0.905882 2.20129326 Nautilia sp. PV-1 2579250 Bacteria Bacteria 52.8 0.022   NTclustered gi|1551374994|gb|CP026530.1| 2579250 g77720 i0 100 0.11522633744856 28 0 12 0 169 196 528334 528307 Nautilia sp. PV-1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Nautilia Nautilia sp. PV-1
23370080 23370080 PRJNA407886_P_NODE_72099_length_249_cov_0.875000_g70405_i0 PRJNA407886 72099 249 0.875 2.17875 Malaciobacter mytili 603050 Bacteria Bacteria 56.5 0.002   NTclustered gi|1435908220|gb|CP031219.1| 1032238 g70405 i0 97.059 0.248995983935743 34 0 13 1 49 81 2770156 2770189 Malaciobacter mytili LMG 24559 chromosome, complete genome blastn 62 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter mytili
28180690 28180690 PRJNA407886_P_NODE_39826_length_347_cov_2.981752_g38132_i0 PRJNA407886 39826 347 2.981752 10.34667944 Arcobacter sp. FWKO B 2593672 Bacteria Bacteria 123 2.5199999999999997e-30   NR WP_200414904.1 2593672 g38132 i0 62 0.864553314121037 100 35 84.7 2 47 340 428 526 WP_200414904.1 phosphoenolpyruvate carboxykinase (ATP) [Arcobacter sp. FWKO B] diamond 300 123 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. FWKO B
29223077 29223077 PRJNA407886_P_NODE_75809_length_246_cov_0.890173_g74115_i0 PRJNA407886 75809 246 0.890173 2.18982558 Helicobacter typhlonius 76936 Bacteria Bacteria 50.1 3.11e-5   NR WP_334089870.1 76936 g74115 i0 43.8 0.780487804878049 64 34 78 1 24 215 28 89 WP_334089870.1 RCC1 domain-containing protein, partial [Helicobacter typhlonius] diamond 192 50.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter typhlonius
31466154 31466154 PRJNA407886_P_NODE_34456_length_381_cov_1.496753_g32762_i0 PRJNA407886 34456 381 1.496753 5.70262893 Sulfurimonas sp. ST-27 3400152 Bacteria Bacteria 86.3 4.31e-17   NR XPB33577.1 3400152 g32762 i0 39 3.13385826771654 136 61 92.1 6 380 30 2 134 XPB33577.1 TIR domain-containing protein [Sulfurimonas sp. ST-27] diamond 1194 86.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp. ST-27

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;