RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA407886", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA407886 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20819937 20819937 PRJNA407886_P_NODE_9177_length_1045_cov_2.662551_g8000_i0 PRJNA407886 9177 1045 2.662551 27.82365795 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 62.1 1.76e-4   NTclustered gi|2806442743|ref|XM_068514405.1| 1144522 g8000 i0 88.462 0.0851674641148325 52 5 5 1 867 917 839 890 Tritrichomonas foetus Digestive cysteine proteinase 1 (LCP1), partial mRNA blastn 89 62.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27233553 27233553 PRJNA407886_P_NODE_26583_length_456_cov_1.932115_g24891_i0 PRJNA407886 26583 456 1.932115 8.8104444 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 67.4 9.36e-10   NR XP_068349620.1 1144522 g24891 i0 34.6 2.44736842105263 107 62 69.1 5 428 114 363 463 XP_068349620.1 uncharacterized protein TRFO_37341 [Tritrichomonas foetus] diamond 1116 67.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27660984 27660984 PRJNA407886_P_NODE_81204_length_241_cov_1.375000_g79510_i0 PRJNA407886 81204 241 1.375 3.31375 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 94.7 3.16e-22   NR XP_001301101.1 412133 g79510 i0 58.8 1.99170124481328 80 33 99.6 0 241 2 66 145 XP_001301101.1 ribosomal protein family [Trichomonas vaginalis G3] diamond 480 94.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32115474 32115474 PRJNA407886_P_NODE_84218_length_197_cov_4.064516_g82524_i0 PRJNA407886 84218 197 4.064516 8.00709652 root 1 Root_unresolved Root_unresolved 56.2 1.39e-7   NR XP_068360038.1 1144522 g82524 i0 49.1 7.50761421319797 55 28 83.8 0 5 169 123 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 1479 56.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;