RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA407886", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA407886 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4245267 4245267 PRJNA407886_P_NODE_81444_length_241_cov_0.916667_g79750_i0 PRJNA407886 81444 241 0.916667 2.20916747 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 91.6 4.6e-14   NTclustered gi|2874253978|emb|OY970303.1| 412054 g79750 i0 79.71 16.7676348547718 138 19 56 8 105 239 6213755 6213886 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 4041 91.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6795534 6795534 PRJNA407886_P_NODE_59706_length_275_cov_1.465347_g58012_i0 PRJNA407886 59706 275 1.465347 4.02970425 Pseudomonadati 3379134 Bacteria Bacteria 90.1 1.22e-18   NR WP_025412381.1 861299 g58012 i0 76.8 10.1563636363636 56 13 61.1 0 268 101 866 921 WP_025412381.1 pyruvate, phosphate dikinase [Gemmatirosa kalamazoonensis] diamond 2793 90.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
9346080 9346080 PRJNA407886_P_NODE_69708_length_251_cov_0.865169_g68014_i0 PRJNA407886 69708 251 0.865169 2.17157419 Gemmatimonas sp. 1962908 Bacteria Bacteria 161 1.92e-46   NR HYW30351.1 1962908 g68014 i0 91.6 1.9840637450199201 83 7 99.2 0 3 251 221 303 HYW30351.1 phosphotransferase family protein [Gemmatimonas sp.] diamond 498 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
19543890 19543890 PRJNA407886_P_NODE_77236_length_245_cov_0.895349_g75542_i0 PRJNA407886 77236 245 0.895349 2.19360505 Roseisolibacter agri 2014610 Bacteria Bacteria 123 1.89e-30   NR WP_284351566.1 2014610 g75542 i0 66.7 0.991836734693878 81 27 99.2 0 244 2 647 727 WP_284351566.1 TonB-dependent receptor [Roseisolibacter agri] diamond 243 123 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
29727795 29727795 PRJNA407886_P_NODE_75930_length_246_cov_0.890173_g74236_i0 PRJNA407886 75930 246 0.890173 2.18982558 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 78.6 9.72e-15   NR HET7790034.1 2448054 g74236 i0 45.6 1.92682926829268 79 41 96.3 1 1 237 305 381 HET7790034.1 hypothetical protein [Gemmatimonadales bacterium] diamond 474 78.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32825179 32825179 PRJNA407886_P_NODE_74880_length_247_cov_0.885057_g73186_i0 PRJNA407886 74880 247 0.885057 2.18609079 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 50.1 1.03e-4   NR HET7603005.1 2448054 g73186 i0 31 1.05668016194332 87 52 99.6 2 1 246 335 418 HET7603005.1 alpha-N-acetylglucosaminidase [Gemmatimonadales bacterium] diamond 261 50.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;