RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA407886", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA407886 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27281930 27281930 PRJNA407886_P_NODE_76583_length_245_cov_0.895349_g74889_i0 PRJNA407886 76583 245 0.895349 2.19360505 Candidatus Nanoperiomorbus 2171988 Bacteria Bacteria 165 2.9299999999999997e-45   NR WP_129621723.1 2171989 g74889 i0 100 2.97551020408163 81 0 99.2 0 2 244 605 685 WP_129621723.1 class I tRNA ligase family protein, partial [Candidatus Nanoperiomorbus periodonticus] diamond 729 165 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanoperiomorbia Candidatus Nanoperiomorbales Candidatus Nanoperiomorbaceae Candidatus Nanoperiomorbus Candidatus Nanoperiomorbus periodonticus
28433606 28433606 PRJNA407886_P_NODE_75566_length_246_cov_0.890173_g73872_i0 PRJNA407886 75566 246 0.890173 2.18982558 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 42 0.0314   NR MCA9343866.1 2026720 g73872 i0 29.6 0.98780487804878 81 51 91.5 1 227 3 44 124 MCA9343866.1 YtxH domain-containing protein [Candidatus Saccharibacteria bacterium] diamond 243 42 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31592689 31592689 PRJNA407886_P_NODE_43476_length_330_cov_1.190661_g41782_i0 PRJNA407886 43476 330 1.190661 3.9291813 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 43.5 0.0472   NR MBP9667417.1 2026720 g41782 i0 28.8 0.6 66 41 54.5 1 148 327 87 152 MBP9667417.1 orotidine 5'-phosphate decarboxylase [Candidatus Saccharibacteria bacterium] diamond 198 43.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;