RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA407368", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407368 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
415027 415027 PRJNA407368_S_NODE_3681_length_305_cov_3.996377_g3579_i0 PRJNA407368 3681 305 3.996377 12.18894985 Tobamovirus tomatotessellati 3432892 Viruses Viruses 553 6.39e-153   NTclustered gi|226235018|dbj|AB355139.1| 12253 g3579 i0 99.344 99.9540983606557 305 2 100 0 1 305 4623 4319 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 30486 553 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
1081742 1081742 PRJNA407368_S_NODE_1921_length_448_cov_3.665871_g1821_i0 PRJNA407368 1921 448 3.665871 16.42310208 Tobamovirus 12234 Viruses Viruses 817 0   NTclustered gi|4377853|gb|AF062519.1|AF062519 12242 g1821 i0 99.554 100 448 2 100 0 1 448 889 442 Tobacco mosaic virus movement protein and coat protein genes, complete cds blastn 44800 822 0.993917274939173 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
4909691 4909691 PRJNA407368_S_NODE_5584_length_230_cov_3.194030_g5482_i0 PRJNA407368 5584 230 3.19403 7.346269 Tobamovirus 12234 Viruses Viruses 420 4.89e-113   NTclustered gi|2085776112|gb|MZ388458.1| 12253 g5482 i0 99.565 99.995652173913 230 1 100 0 1 230 4598 4827 Tomato mosaic virus isolate ToMV-WF, complete genome blastn 22999 420 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;