RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA407368" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407368 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28338784 28338784 PRJNA407368_S_NODE_1026_length_625_cov_22.741611_g950_i0 PRJNA407368 1026 625 22.741611 142.13506875 Fibrobacterota bacterium 2052160 Bacteria Bacteria 52 4.54e-4   NR MDB5048107.1 2052160 g950 i0 52.2 0.2208 46 22 22.1 0 279 416 241 286 MDB5048107.1 hypothetical protein [Fibrobacterota bacterium] diamond 138 52 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
30802093 30802093 PRJNA407368_S_NODE_8714_length_172_cov_2.055944_g8612_i0 PRJNA407368 8714 172 2.055944 3.53622368 Fibrobacteria bacterium 2725311 Bacteria Bacteria 101 1.5e-23   NR HKP94394.1 2725311 g8612 i0 88.2 3.62790697674419 51 6 89 0 166 14 52 102 HKP94394.1 pitrilysin family protein [Fibrobacteria bacterium] diamond 624 101 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
31371254 31371254 PRJNA407368_S_NODE_2156_length_418_cov_5.316195_g2055_i0 PRJNA407368 2156 418 5.316195 22.2216951 Fibrobacterota bacterium 2052160 Bacteria Bacteria 75.1 9.37e-15   NR HAJ79618.1 2052160 g2055 i0 77.5 0.287081339712919 40 9 28.7 0 122 3 1 40 HAJ79618.1 hypothetical protein [Fibrobacterota bacterium] diamond 120 75.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;