RNAquarium Metadata Server
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contig_metadata

15 rows where bioproject = "PRJNA407368" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA407368 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10619040 10619040 PRJNA407368_S_NODE_4909_length_252_cov_4.995516_g4807_i0 PRJNA407368 4909 252 4.995516 12.58870032 Vannella septentrionalis 197531 Discosea other_Eukaryota 416 7.029999999999999e-112   NTclustered gi|300078499|gb|GU001161.1| 197531 g4807 i0 96.429 31.781746031746 252 9 100 0 1 252 1408 1157 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8009 416 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
10619044 10619044 PRJNA407368_S_NODE_5129_length_244_cov_17.567442_g5027_i0 PRJNA407368 5129 244 17.567442 42.86455848 Stenamoeba amazonica 746910 Discosea other_Eukaryota 431 2.419999999999999e-116   NTclustered gi|292399456|gb|GU810184.1| 746910 g5027 i0 100 39.9180327868852 233 0 95 0 1 233 1630 1862 Stenamoeba amazonica strain P119 small subunit ribosomal RNA gene, partial sequence blastn 9740 431 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba amazonica
11893954 11893954 PRJNA407368_S_NODE_5690_length_227_cov_11.525253_g5588_i0 PRJNA407368 5690 227 11.525253 26.16232431 Vannella septentrionalis 197531 Discosea other_Eukaryota 364 2.289999999999999e-96   NTclustered gi|300078499|gb|GU001161.1| 197531 g5588 i0 95.595 27.3700440528634 227 10 100 0 1 227 877 1103 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6213 364 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
11893964 11893964 PRJNA407368_S_NODE_6170_length_216_cov_4.962567_g6068_i0 PRJNA407368 6170 216 4.962567 10.71914472 Vannella septentrionalis 197531 Discosea other_Eukaryota 318 1.7e-82   NTclustered gi|300078499|gb|GU001161.1| 197531 g6068 i0 93.868 20.8240740740741 212 12 98 1 5 216 4340 4130 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4498 318 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
13168780 13168780 PRJNA407368_S_NODE_1471_length_523_cov_31.779352_g1378_i0 PRJNA407368 1471 523 31.779352 166.20601096 Vannella septentrionalis 197531 Discosea other_Eukaryota 845 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g1378 i0 95.985 42.623326959847 523 16 99 3 5 523 2954 2433 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22292 845 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14444033 14444033 PRJNA407368_S_NODE_5412_length_235_cov_46.330097_g5310_i0 PRJNA407368 5412 235 46.330097 108.87572795 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 424 3.87e-114   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g5310 i0 99.149 92.0468085106383 235 2 100 0 1 235 371 137 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 21631 424 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
16992713 16992713 PRJNA407368_S_NODE_8954_length_169_cov_2.042857_g8852_i0 PRJNA407368 8954 169 2.042857 3.45242833 Stenamoeba amazonica 746910 Discosea other_Eukaryota 278 2.14e-70   NTclustered gi|292399456|gb|GU810184.1| 746910 g8852 i0 96.491 8.02366863905325 171 1 100 4 1 169 1067 900 Stenamoeba amazonica strain P119 small subunit ribosomal RNA gene, partial sequence blastn 1356 278 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba amazonica
16992728 16992728 PRJNA407368_S_NODE_9694_length_159_cov_18.430769_g9592_i0 PRJNA407368 9694 159 18.430769 29.30492271 Vannella septentrionalis 197531 Discosea other_Eukaryota 289 9.22e-74   NTclustered gi|300078499|gb|GU001161.1| 197531 g9592 i0 99.371 100.672955974843 159 1 100 0 1 159 2278 2436 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16007 289 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
18266710 18266710 PRJNA407368_S_NODE_5535_length_231_cov_13.445545_g5433_i0 PRJNA407368 5535 231 13.445545 31.05920895 Vannella septentrionalis 197531 Discosea other_Eukaryota 394 2.98e-105   NTclustered gi|300078499|gb|GU001161.1| 197531 g5433 i0 97.403 25.6060606060606 231 6 100 0 1 231 3144 2914 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5915 394 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
18266746 18266746 PRJNA407368_S_NODE_6895_length_200_cov_15.818713_g6793_i0 PRJNA407368 6895 200 15.818713 31.637426 Vannella septentrionalis 197531 Discosea other_Eukaryota 359 9.14e-95   NTclustered gi|300078499|gb|GU001161.1| 197531 g6793 i0 99 62.3 200 2 100 0 1 200 3431 3630 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12460 359 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
20816833 20816833 PRJNA407368_S_NODE_8997_length_168_cov_3.323741_g8895_i0 PRJNA407368 8997 168 3.323741 5.58388488 Vannella septentrionalis 197531 Discosea other_Eukaryota 278 2.14e-70   NTclustered gi|300078499|gb|GU001161.1| 197531 g8895 i0 96.429 1 168 6 100 0 1 168 1549 1382 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 168 278 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
23367110 23367110 PRJNA407368_S_NODE_1559_length_504_cov_120.372632_g1465_i0 PRJNA407368 1559 504 120.372632 606.67806528 Stenamoeba amazonica 746910 Discosea other_Eukaryota 510 6.7599999999999995e-140   NTclustered gi|292399456|gb|GU810184.1| 746910 g1465 i0 95.886 40.3075396825397 316 12 63 1 173 487 1796 2111 Stenamoeba amazonica strain P119 small subunit ribosomal RNA gene, partial sequence blastn 20315 510 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba amazonica
23367268 23367268 PRJNA407368_S_NODE_9719_length_159_cov_3.738462_g9617_i0 PRJNA407368 9719 159 3.738462 5.94415458 Stenamoeba amazonica 746910 Discosea other_Eukaryota 294 1.98e-75   NTclustered gi|292399456|gb|GU810184.1| 746910 g9617 i0 100 99.8993710691824 159 0 100 0 1 159 1210 1052 Stenamoeba amazonica strain P119 small subunit ribosomal RNA gene, partial sequence blastn 15884 294 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba amazonica
27802127 27802127 PRJNA407368_S_NODE_9564_length_161_cov_2.863636_g9462_i0 PRJNA407368 9564 161 2.863636 4.61045396 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.3 5.82e-5   NR XP_004336616.1 1257118 g9462 i0 68.8 1.15527950310559 32 10 59.6 0 106 11 7 38 XP_004336616.1 ribosomal protein L10, putative [Acanthamoeba castellanii str. Neff] diamond 186 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31750454 31750454 PRJNA407368_S_NODE_7557_length_188_cov_3.150943_g7455_i0 PRJNA407368 7557 188 3.150943 5.92377284 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 1.87e-16   NR XP_004356787.1 1257118 g7455 i0 60.6 1.0531914893617 66 22 98.9 1 188 3 518 583 XP_004356787.1 IQGAPrelated protein [Acanthamoeba castellanii str. Neff] diamond 198 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;