contig_metadata
5 rows where bioproject = "PRJNA407368" and tax_phylum = "Campylobacterota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27724339 | 27724339 | PRJNA407368_S_NODE_5324_length_238_cov_2.339713_g5222_i0 | PRJNA407368 | 5324 | 238 | 2.339713 | 5.56851694 | Halarcobacter | 2321115 | Bacteria | Bacteria | 90.1 | 3.03e-20 | NR | WP_129082865.1 | 877500 | g5222 | i0 | 61.4 | 10.6008403361345 | 70 | 27 | 88.2 | 0 | 21 | 230 | 107 | 176 | WP_129082865.1 DedA family protein [Halarcobacter anaerophilus] | diamond | 2523 | 90.1 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Arcobacteraceae | Halarcobacter | Halarcobacter anaerophilus | ||
| 30075328 | 30075328 | PRJNA407368_S_NODE_3032_length_341_cov_6.727564_g2930_i0 | PRJNA407368 | 3032 | 341 | 6.727564 | 22.94099324 | Helicobacter pylori | 210 | Bacteria | Bacteria | 85.5 | 1.2e-19 | NR | GAA8838853.1 | 210 | g2930 | i0 | 92.9 | 0.36950146627566 | 42 | 3 | 37 | 0 | 331 | 206 | 2 | 43 | GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] | diamond | 126 | 85.5 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori | ||
| 31387924 | 31387924 | PRJNA407368_S_NODE_1656_length_488_cov_9.015251_g1560_i0 | PRJNA407368 | 1656 | 488 | 9.015251 | 43.99442488 | Campylobacter | 194 | Bacteria | Bacteria | 49.3 | 1.07e-4 | NR | WP_251831854.1 | 197 | g1560 | i0 | 46.9 | 0.903688524590164 | 49 | 24 | 28.9 | 1 | 142 | 2 | 1 | 49 | WP_251831854.1 hypothetical protein [Campylobacter jejuni] | diamond | 441 | 49.3 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter jejuni | ||
| 32351973 | 32351973 | PRJNA407368_S_NODE_9479_length_162_cov_3.000000_g9377_i0 | PRJNA407368 | 9479 | 162 | 3 | 4.86 | Desulfurellales bacterium | 2482794 | Bacteria | Bacteria | 66.6 | 4.54e-11 | NR | TXH53030.1 | 2482794 | g9377 | i0 | 73.6 | 1.96296296296296 | 53 | 14 | 98.1 | 0 | 161 | 3 | 110 | 162 | TXH53030.1 MAG: hypothetical protein E6Q97_14060 [Desulfurellales bacterium] | diamond | 318 | 66.6 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Desulfurellia | Desulfurellales | Desulfurellales bacterium | ||||
| 32793339 | 32793339 | PRJNA407368_S_NODE_5120_length_245_cov_2.333333_g5018_i0 | PRJNA407368 | 5120 | 245 | 2.333333 | 5.71666585 | Desulfurellales bacterium | 2482794 | Bacteria | Bacteria | 106 | 1.12e-25 | NR | TXH53380.1 | 2482794 | g5018 | i0 | 63.3 | 0.96734693877551 | 79 | 29 | 96.7 | 0 | 238 | 2 | 84 | 162 | TXH53380.1 MAG: hypothetical protein E6Q97_13350 [Desulfurellales bacterium] | diamond | 237 | 106 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Desulfurellia | Desulfurellales | Desulfurellales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;