contig_metadata
16 rows where bioproject = "PRJNA407368", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1081776 | 1081776 | PRJNA407368_S_NODE_6501_length_208_cov_90.810056_g6399_i0 | PRJNA407368 | 6501 | 208 | 90.810056 | 188.88491648 | Bdellovibrio | 958 | Bacteria | Bacteria | 285 | 1.6499999999999998e-72 | NTclustered | gi|2800948966|gb|CP168973.1| | 959 | g6399 | i0 | 91.388 | 161.423076923077 | 209 | 16 | 100 | 2 | 1 | 208 | 816059 | 816266 | Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome | blastn | 33576 | 285 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 2965918 | 2965918 | PRJNA407368_S_NODE_8243_length_177_cov_1384.527027_g8141_i0 | PRJNA407368 | 8243 | 177 | 1384.527027 | 2450.61283779 | uncultured Bdellovibrio sp. | 239744 | Bacteria | Bacteria | 224 | 2.99e-54 | NTclustered | gi|389546679|gb|JQ401607.1| | 239744 | g8141 | i0 | 91.463 | 104.423728813559 | 164 | 12 | 92 | 2 | 15 | 177 | 128 | 290 | Uncultured Bdellovibrio sp. clone CNY_01758 16S ribosomal RNA gene, partial sequence | blastn | 18483 | 224 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | uncultured Bdellovibrio sp. | ||
| 10009760 | 10009760 | PRJNA407368_S_NODE_2008_length_436_cov_87.294840_g1908_i0 | PRJNA407368 | 2008 | 436 | 87.29484 | 380.6055024 | Bdellovibrio | 958 | Bacteria | Bacteria | 411 | 6.029999999999999e-110 | NTclustered | gi|2800924434|gb|CP168967.1| | 959 | g1908 | i0 | 87.123 | 114.988532110092 | 365 | 43 | 98 | 3 | 8 | 369 | 783584 | 783221 | Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome | blastn | 50135 | 411 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 10619082 | 10619082 | PRJNA407368_S_NODE_7089_length_196_cov_142.455090_g6987_i0 | PRJNA407368 | 7089 | 196 | 142.45509 | 279.2119764 | Bdellovibrio sp. HCB337 | 3394358 | Bacteria | Bacteria | 296 | 7.089999999999998e-76 | NTclustered | gi|2895525383|gb|CP178621.1| | 3394358 | g6987 | i0 | 93.878 | 226.887755102041 | 196 | 12 | 100 | 0 | 1 | 196 | 3448050 | 3447855 | Bdellovibrio sp. HCB337 chromosome, complete genome | blastn | 44470 | 296 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB337 | ||
| 10619106 | 10619106 | PRJNA407368_S_NODE_849_length_704_cov_612.428148_g781_i0 | PRJNA407368 | 849 | 704 | 612.428148 | 4311.49416192 | Bdellovibrio sp. HCB337 | 3394358 | Bacteria | Bacteria | 959 | 0 | NTclustered | gi|2895525383|gb|CP178621.1| | 3394358 | g781 | i0 | 91.465 | 190.663352272727 | 703 | 52 | 99 | 5 | 10 | 704 | 3446739 | 3447441 | Bdellovibrio sp. HCB337 chromosome, complete genome | blastn | 134227 | 959 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB337 | ||
| 13168904 | 13168904 | PRJNA407368_S_NODE_6451_length_209_cov_688.033333_g6349_i0 | PRJNA407368 | 6451 | 209 | 688.033333 | 1437.98966597 | Micavibrio aeruginosavorus | 349221 | Bacteria | Bacteria | 257 | 3.6200000000000005e-64 | NTclustered | gi|1950812799|gb|CP066681.1| | 349221 | g6349 | i0 | 89.372 | 176.684210526316 | 207 | 18 | 98 | 4 | 5 | 209 | 659793 | 659589 | Micavibrio aeruginosavorus isolate NC_groundwater_70_Ag_B-0.1um_54_66 chromosome | blastn | 36927 | 257 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Micavibrio | Micavibrio aeruginosavorus | ||
| 16384122 | 16384122 | PRJNA407368_S_NODE_6633_length_205_cov_364.948864_g6531_i0 | PRJNA407368 | 6633 | 205 | 364.948864 | 748.1451712 | Bdellovibrio | 958 | Bacteria | Bacteria | 318 | 1.6e-82 | NTclustered | gi|2524301767|gb|OR186335.1| | 28201 | g6531 | i0 | 95.477 | 97.9219512195122 | 199 | 9 | 97 | 0 | 7 | 205 | 242 | 440 | Bdellovibrio sp. strain YBD-1 16S ribosomal RNA gene, partial sequence | blastn | 20074 | 320 | 0.99375 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. | ||
| 16384131 | 16384131 | PRJNA407368_S_NODE_7273_length_193_cov_83.329268_g7171_i0 | PRJNA407368 | 7273 | 193 | 83.329268 | 160.82548724 | Pseudobdellovibrionaceae | 213483 | Bacteria | Bacteria | 302 | 1.5e-77 | NTclustered | gi|2800948966|gb|CP168973.1| | 959 | g7171 | i0 | 94.819 | 343.098445595855 | 193 | 10 | 100 | 0 | 1 | 193 | 817491 | 817683 | Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome | blastn | 66218 | 302 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 16992663 | 16992663 | PRJNA407368_S_NODE_6454_length_209_cov_183.161111_g6352_i0 | PRJNA407368 | 6454 | 209 | 183.161111 | 382.80672199 | Bdellovibrio bacteriovorus | 959 | Bacteria | Bacteria | 326 | 9.78e-85 | NTclustered | gi|578016248|gb|CP002190.1| | 765869 | g6352 | i0 | 95.567 | 175.162679425837 | 203 | 9 | 97 | 0 | 7 | 209 | 611135 | 610933 | Bdellovibrio bacteriovorus W, complete genome | blastn | 36609 | 326 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 16992675 | 16992675 | PRJNA407368_S_NODE_7154_length_195_cov_130.162651_g7052_i0 | PRJNA407368 | 7154 | 195 | 130.162651 | 253.81716945 | Bdellovibrio sp. HCB337 | 3394358 | Bacteria | Bacteria | 331 | 1.93e-86 | NTclustered | gi|2895525383|gb|CP178621.1| | 3394358 | g7052 | i0 | 97.436 | 196.487179487179 | 195 | 4 | 100 | 1 | 1 | 195 | 3447692 | 3447885 | Bdellovibrio sp. HCB337 chromosome, complete genome | blastn | 38315 | 331 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB337 | ||
| 22758636 | 22758636 | PRJNA407368_S_NODE_3038_length_340_cov_71.688103_g2936_i0 | PRJNA407368 | 3038 | 340 | 71.688103 | 243.7395502 | Bdellovibrio | 958 | Bacteria | Bacteria | 411 | 4.5999999999999997e-110 | NTclustered | gi|2800924434|gb|CP168967.1| | 959 | g2936 | i0 | 88.922 | 148.479411764706 | 334 | 35 | 98 | 2 | 8 | 340 | 783584 | 783252 | Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome | blastn | 50483 | 411 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 24641556 | 24641556 | PRJNA407368_S_NODE_6500_length_208_cov_139.005587_g6398_i0 | PRJNA407368 | 6500 | 208 | 139.005587 | 289.13162096 | Bdellovibrio bacteriovorus | 959 | Bacteria | Bacteria | 324 | 3.5e-84 | NTclustered | gi|2800948966|gb|CP168973.1| | 959 | g6398 | i0 | 94.737 | 187.346153846154 | 209 | 9 | 100 | 2 | 1 | 208 | 816266 | 816059 | Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome | blastn | 38968 | 324 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 25307835 | 25307835 | PRJNA407368_S_NODE_3040_length_340_cov_54.437299_g2938_i0 | PRJNA407368 | 3040 | 340 | 54.437299 | 185.0868166 | Bdellovibrio | 958 | Bacteria | Bacteria | 438 | 2.109999999999999e-118 | NTclustered | gi|2800924434|gb|CP168967.1| | 959 | g2938 | i0 | 90.419 | 146.7 | 334 | 30 | 98 | 2 | 8 | 340 | 783584 | 783252 | Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome | blastn | 49878 | 438 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 27391692 | 27391692 | PRJNA407368_S_NODE_5503_length_232_cov_13.270936_g5401_i0 | PRJNA407368 | 5503 | 232 | 13.270936 | 30.78857152 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 124 | 4.929999999999999e-31 | NR | MCB0392645.1 | 2053517 | g5401 | i0 | 79.7 | 0.956896551724138 | 74 | 15 | 95.7 | 0 | 224 | 3 | 476 | 549 | MCB0392645.1 cytochrome c biogenesis protein CcsA [Bdellovibrionales bacterium] | diamond | 222 | 124 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 29285823 | 29285823 | PRJNA407368_S_NODE_9169_length_166_cov_2.452555_g9067_i0 | PRJNA407368 | 9169 | 166 | 2.452555 | 4.0712413 | Bdellovibrio sp. | 28201 | Bacteria | Bacteria | 59.3 | 4.78e-9 | NR | MFM6930298.1 | 28201 | g9067 | i0 | 48.1 | 0.975903614457831 | 54 | 28 | 97.6 | 0 | 165 | 4 | 109 | 162 | MFM6930298.1 MarR family winged helix-turn-helix transcriptional regulator [Bdellovibrio sp.] | diamond | 162 | 59.3 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. | ||
| 32604666 | 32604666 | PRJNA407368_S_NODE_1780_length_468_cov_4.457859_g1683_i0 | PRJNA407368 | 1780 | 468 | 4.457859 | 20.86278012 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 70.9 | 6.84e-11 | NR | MBK7960150.1 | 2053517 | g1683 | i0 | 38.2 | 0.83974358974359 | 131 | 73 | 79.5 | 4 | 82 | 453 | 813 | 942 | MBK7960150.1 DUF2341 domain-containing protein [Bdellovibrionales bacterium] | diamond | 393 | 70.9 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;