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contig_metadata

17 rows where bioproject = "PRJNA407368" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 17 ✖

bioproject 1

  • PRJNA407368 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3632558 3632558 PRJNA407368_S_NODE_4363_length_273_cov_456.741803_g4261_i0 PRJNA407368 4363 273 456.741803 1246.90512219 Eukaryota 2759 Plants Plants 475 1.2499999999999999e-129   NTclustered gi|1714003650|gb|MN243923.1| 3079 g4261 i0 98.168 100.234432234432 273 4 100 1 1 273 779 508 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 27364 475 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
3632599 3632599 PRJNA407368_S_NODE_8343_length_176_cov_3.251701_g8241_i0 PRJNA407368 8343 176 3.251701 5.72299376 Trebouxia 13786 Plants Plants 287 3.74e-73   NTclustered gi|1545969|emb|Z68705.1| 53268 g8241 i0 99.367 89.7727272727273 158 1 90 0 1 158 1770 1613 T.arboricola (SAG 219-1a) 5.8S, 18S and 26S rRNA genes blastn 15800 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia arboricola
6792857 6792857 PRJNA407368_S_NODE_6826_length_202_cov_2.167630_g6724_i0 PRJNA407368 6826 202 2.16763 4.3786126 Auxenochlorella pyrenoidosa 3078 Plants Plants 363 7.149999999999999e-96   NTclustered gi|1201359271|gb|MF040793.1| 3078 g6724 i0 99.01 90.6584158415842 202 2 100 0 1 202 641 842 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 18313 363 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
8734567 8734567 PRJNA407368_S_NODE_8387_length_175_cov_157.547945_g8285_i0 PRJNA407368 8387 175 157.547945 275.70890375 Eukaryota 2759 Plants Plants 222 1.0599999999999999e-53   NTclustered gi|371782091|emb|HE610123.1| 3107 g8285 i0 91.515 94.2857142857143 165 8 94 5 12 175 4967 5126 Hydrodictyon reticulatum 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M2243 blastn 16500 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum
9343302 9343302 PRJNA407368_S_NODE_6588_length_206_cov_21.000000_g6486_i0 PRJNA407368 6588 206 21 43.26 Chloroidium ellipsoideum 63676 Plants Plants 292 9.75e-75   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g6486 i0 92.233 100.980582524272 206 16 100 0 1 206 2833 3038 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 20802 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
10009816 10009816 PRJNA407368_S_NODE_7788_length_184_cov_11.858065_g7686_i0 PRJNA407368 7788 184 11.858065 21.8188396 root 1 Root_unresolved Root_unresolved 289 1.0999999999999999e-73   NTclustered gi|189909382|gb|EU725860.1| 13787 g7686 i0 96.571 101.559782608696 175 5 95 1 1 174 1534 1360 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 18687 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
11284982 11284982 PRJNA407368_S_NODE_4109_length_284_cov_49.533333_g4007_i0 PRJNA407368 4109 284 49.533333 140.67466572 Eukaryota 2759 Plants Plants 479 1.01e-130   NTclustered gi|1898545223|gb|MT951391.1| 3078 g4007 i0 98.529 95.7746478873239 272 3 96 1 1 272 693 963 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 27200 479 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
13835235 13835235 PRJNA407368_S_NODE_8051_length_180_cov_7.112583_g7949_i0 PRJNA407368 8051 180 7.112583 12.8026494 Eukaryota 2759 Plants Plants 89.8 1.16e-13   NTclustered gi|970567768|dbj|LC066339.1| 51712 g7949 i0 100 28.4944444444444 48 0 27 0 1 48 1829 1876 Stephanosphaera pluvialis gene for 26S rRNA, partial sequence, strain: UTEX 771 blastn 5129 89.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Stephanosphaera Stephanosphaera pluvialis
15109471 15109471 PRJNA407368_S_NODE_8052_length_180_cov_7.066225_g7950_i0 PRJNA407368 8052 180 7.066225 12.719205 Chlorophyta 3041 Plants Plants 202 1.4299999999999999e-47   NTclustered gi|371782088|emb|HE610120.1| 1108793 g7950 i0 86.813 101.061111111111 182 22 100 2 1 180 4149 3968 Oltmannsiellopsis sp. CCMP1240 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain CCMP1240 blastn 18191 202 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Oltmannsiellopsidales Oltmannsiellopsidaceae Oltmannsiellopsis Oltmannsiellopsis sp. CCMP1240
16384091 16384091 PRJNA407368_S_NODE_2153_length_418_cov_861.766067_g2052_i0 PRJNA407368 2153 418 861.766067 3602.18216006 Trebouxia 13786 Plants Plants 619 8.79e-173   NTclustered gi|162134340|gb|EU123979.1| 160068 g2052 i0 93.541 121.614832535885 418 23 99 3 5 418 2473 2056 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 50835 619 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
16384116 16384116 PRJNA407368_S_NODE_5813_length_224_cov_28.728205_g5711_i0 PRJNA407368 5813 224 28.728205 64.3511792 Trebouxia 13786 Plants Plants 379 8.039999999999998e-101   NTclustered gi|933918303|gb|KP282203.1| 1229085 g5711 i0 97.727 98.0580357142857 220 5 98 0 1 220 478 697 Uncultured Trebouxia clone AA6 23S ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 21965 379 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxia
16992531 16992531 PRJNA407368_S_NODE_10534_length_151_cov_2.827869_g10432_i0 PRJNA407368 10534 151 2.827869 4.27008219 Eukaryota 2759 Plants Plants 79.7 9.81e-16   NR KAK2079309.1 3111 g10432 i0 80 18.8741721854305 50 10 99.3 0 150 1 241 290 KAK2079309.1 70-kilodalton heat shock protein [Prototheca wickerhamii] diamond 2850 79.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
18266686 18266686 PRJNA407368_S_NODE_4155_length_282_cov_10.766798_g4053_i0 PRJNA407368 4155 282 10.766798 30.36237036 Ostreobium quekettii 121088 Plants Plants 54.7 0.007   NTclustered gi|2306645722|gb|OK189530.1| 121088 g4053 i0 94.444 0.127659574468085 36 1 12 1 1 35 66811 66846 Ostreobium quekettii voucher Chloroplast genome chloroplast, complete genome blastn 36 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
20207887 20207887 PRJNA407368_S_NODE_2796_length_359_cov_46.284848_g2694_i0 PRJNA407368 2796 359 46.284848 166.16260432 Trebouxia 13786 Plants Plants 628 1.2399999999999997e-175   NTclustered gi|171479768|gb|EU352794.1| 53267 g2694 i0 98.329 102.871866295265 359 5 100 1 1 359 656 299 Trebouxia jamesii strain UTEX 2233 large subunit ribosomal RNA (rrnL) gene, partial sequence; and unknown genes; chloroplast blastn 36931 628 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia jamesii
22758648 22758648 PRJNA407368_S_NODE_4458_length_269_cov_111.212500_g4356_i0 PRJNA407368 4458 269 111.2125 299.161625 Eukaryota 2759 Plants Plants 305 1.71e-78   NTclustered gi|1898545223|gb|MT951391.1| 3078 g4356 i0 98.276 65.0111524163569 174 3 65 0 85 258 1240 1413 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 17488 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
24033471 24033471 PRJNA407368_S_NODE_979_length_642_cov_7.318108_g905_i0 PRJNA407368 979 642 7.318108 46.98225336 Eukaryota 2759 Plants Plants 206 4.629999999999999e-48   NTclustered gi|2724824305|gb|PP746556.1| 91190 g905 i0 78.659 36.7725856697819 328 56 50 11 202 523 2842 2523 Dicloster acuatus culture SAG:41.98 mitochondrion, complete genome blastn 23608 207 0.995169082125604 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
32887885 32887885 PRJNA407368_S_NODE_800_length_725_cov_16.553161_g734_i0 PRJNA407368 800 725 16.553161 120.01041725 Chlamydomonas sp. UWO 241 1653778 Plants Plants 139 6.22e-35   NR KAG1664378.1 1653778 g734 i0 81.6 0.31448275862069 76 14 31.4 0 580 353 164 239 KAG1664378.1 hypothetical protein FOA52_004711 [Chlamydomonas sp. UWO 241] diamond 228 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;