RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA407368", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA407368 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3632602 3632602 PRJNA407368_S_NODE_8703_length_172_cov_2.377622_g8601_i0 PRJNA407368 8703 172 2.377622 4.08950984 Metazoa 33208 Nematoda Nematoda 52.8 0.014   NTclustered gi|270309021|dbj|AB500154.1| 6325 g8601 i0 100 1.13953488372093 28 0 16 0 145 172 28 1 Bursaphelenchus mucronatus genes for 26S ribosomal RNA, intergenic spacer with variation 1, 18S ribosomal RNA, partial and complete sequence blastn 196 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus mucronatus
10009768 10009768 PRJNA407368_S_NODE_2388_length_396_cov_20.419619_g2286_i0 PRJNA407368 2388 396 20.419619 80.86169124 Bursaphelenchus 6324 Nematoda Nematoda 62.1 6.3e-5   NTclustered gi|270309021|dbj|AB500154.1| 6325 g2286 i0 82.857 1.02777777777778 70 10 17 2 329 396 70 1 Bursaphelenchus mucronatus genes for 26S ribosomal RNA, intergenic spacer with variation 1, 18S ribosomal RNA, partial and complete sequence blastn 407 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus mucronatus
32762110 32762110 PRJNA407368_S_NODE_960_length_651_cov_6.289389_g886_i0 PRJNA407368 960 651 6.289389 40.94392239 Gnathostoma spinigerum 75299 Nematoda Nematoda 117 1.18e-30   NR MFH4985130.1 75299 g886 i0 92.6 0.248847926267281 54 4 24.9 0 2 163 14 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 162 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;