RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA407368", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA407368 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2965833 2965833 PRJNA407368_S_NODE_4503_length_268_cov_3.719665_g4401_i0 PRJNA407368 4503 268 3.719665 9.9687022 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 3.15e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g4401 i0 90.385 0.869402985074627 52 2 19 3 132 182 2561 2610 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
24641611 24641611 PRJNA407368_S_NODE_9580_length_161_cov_2.545455_g9478_i0 PRJNA407368 9580 161 2.545455 4.09818255 Trichomonas gallinae 56777 Parabasalia other_Eukaryota 119 1.3e-22   NTclustered gi|2587729139|gb|OR478975.1| 56777 g9478 i0 85.841 6.74534161490683 113 14 70 2 1 112 829 940 Trichomonas gallinae elongation factor 1 alpha (EF1A) mRNA, complete cds blastn 1086 119 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas gallinae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;