RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA407368", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA407368 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4242179 4242179 PRJNA407368_S_NODE_4284_length_277_cov_6.883065_g4182_i0 PRJNA407368 4284 277 6.883065 19.06609005 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 335 2.2599999999999993e-87   NTclustered gi|563351663|gb|CP006913.1| 1394709 g4182 i0 88.489 85.043321299639 278 30 100 2 1 277 126014 125738 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 23557 335 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
10619064 10619064 PRJNA407368_S_NODE_6009_length_219_cov_22.352632_g5907_i0 PRJNA407368 6009 219 22.352632 48.95226408 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 250 6.3999999999999996e-62   NTclustered gi|563351663|gb|CP006913.1| 1394709 g5907 i0 87.273 322.607305936073 220 26 100 2 1 219 125768 125550 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 70651 250 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;