RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA407087" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407087 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27376913 27376913 PRJNA407087_S_NODE_1683_length_514_cov_7.317526_g1250_i0 PRJNA407087 1683 514 7.317526 37.61208364 Pseudomonadati 3379134 Bacteria Bacteria 113 3.41e-28   NR OGV03533.1 1798447 g1250 i0 40.1 6.57782101167315 157 83 87 5 485 39 13 166 OGV03533.1 MAG: hypothetical protein A2330_06670 [Ignavibacteria bacterium RIFOXYB2_FULL_36_7] diamond 3381 113 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium RIFOXYB2_FULL_36_7
31704011 31704011 PRJNA407087_S_NODE_7917_length_172_cov_2.097902_g7454_i0 PRJNA407087 7917 172 2.097902 3.60839144 Bacteria 2 Bacteria Bacteria 44.3 8.19e-4   NR MBI2420268.1 2049428 g7454 i0 63.6 1.23837209302326 33 12 57.6 0 73 171 3 35 MBI2420268.1 RNA-binding protein [Ignavibacteriales bacterium] diamond 213 44.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;