RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA407087" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407087 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5518707 5518707 PRJNA407087_S_NODE_2065_length_458_cov_5.305361_g1609_i0 PRJNA407087 2065 458 5.305361 24.29855338 Anneissia japonica 1529436 Echinodermata other_Eukaryota 52.8 0.044   NTclustered gi|1826617890|ref|XM_033241892.1| 1529436 g1609 i0 100 0.305676855895196 28 0 6 0 28 55 1637 1610 PREDICTED: Anneissia japonica nucleolin-like (LOC117101811), transcript variant X2, mRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
24641404 24641404 PRJNA407087_S_NODE_800_length_829_cov_37.120000_g508_i0 PRJNA407087 800 829 37.12 307.7248 Metazoa 33208 Echinodermata other_Eukaryota 311 8.09e-103   NR XP_041453906.1 7654 g508 i0 61.7 85.0458383594692 253 92 90.8 2 1 753 51 300 XP_041453906.1 ADP/ATP translocase 3-like [Lytechinus variegatus] diamond 70503 314 0.990445859872611 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
26917264 26917264 PRJNA407087_S_NODE_2402_length_414_cov_5.231169_g1941_i0 PRJNA407087 2402 414 5.231169 21.65703966 Acanthaster planci 133434 Echinodermata other_Eukaryota 181 3.71e-53   NR XP_022081367.1 133434 g1941 i0 61.4 8.64492753623188 132 51 95.7 0 412 17 130 261 XP_022081367.1 mannose-1-phosphate guanyltransferase beta-A-like [Acanthaster planci] diamond 3579 181 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
26917270 26917270 PRJNA407087_S_NODE_9602_length_154_cov_1.336000_g9139_i0 PRJNA407087 9602 154 1.336 2.05744 Patiria miniata 46514 Echinodermata other_Eukaryota 43.1 0.00785   NR XP_038075555.1 46514 g9139 i0 54.9 0.993506493506494 51 22 99.4 1 153 1 187 236 XP_038075555.1 60S ribosomal protein L6-like [Patiria miniata] diamond 153 43.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
27296710 27296710 PRJNA407087_S_NODE_8403_length_165_cov_4.191176_g7940_i0 PRJNA407087 8403 165 4.191176 6.9154404 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 41.2 0.0458   NR XP_003723284.2 7668 g7940 i0 36.2 0.854545454545454 47 30 85.5 0 24 164 363 409 XP_003723284.2 uncharacterized protein LOC100893670 [Strongylocentrotus purpuratus] diamond 141 41.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
28875484 28875484 PRJNA407087_S_NODE_7988_length_171_cov_1.901408_g7525_i0 PRJNA407087 7988 171 1.901408 3.25140768 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 54.7 7.54e-7   NR XP_041455176.1 7654 g7525 i0 44.9 4.6140350877193 49 26 86 1 163 17 165 212 XP_041455176.1 cathepsin Z-like [Lytechinus variegatus] diamond 789 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
29128327 29128327 PRJNA407087_S_NODE_10089_length_150_cov_1.834711_g9626_i0 PRJNA407087 10089 150 1.834711 2.7520665 Diadema antillarum 105358 Echinodermata other_Eukaryota 57 8.28e-8   NR XP_071492371.1 105358 g9626 i0 52.1 2.76 48 23 96 0 3 146 83 130 XP_071492371.1 nucleoside diphosphate-linked moiety X motif 6-like [Diadema antillarum] diamond 414 57 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
32558544 32558544 PRJNA407087_S_NODE_5299_length_223_cov_5.628866_g4836_i0 PRJNA407087 5299 223 5.628866 12.55237118 Echinoidea 7625 Echinodermata other_Eukaryota 55.1 5.65e-7   NR XP_030840219.1 7668 g4836 i0 37.7 3.29596412556054 61 35 78 1 18 191 133 193 XP_030840219.1 calcium-binding protein P isoform X2 [Strongylocentrotus purpuratus] diamond 735 55.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
32887877 32887877 PRJNA407087_S_NODE_5320_length_223_cov_2.597938_g4857_i0 PRJNA407087 5320 223 2.597938 5.79340174 Patiria miniata 46514 Echinodermata other_Eukaryota 47.4 4.87e-4   NR XP_038051309.1 46514 g4857 i0 54.8 9.14798206278027 31 14 41.7 0 159 67 109 139 XP_038051309.1 serine/arginine-rich splicing factor 7-like isoform X1 [Patiria miniata] diamond 2040 47.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;