RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA407087" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA407087 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10618892 10618892 PRJNA407087_S_NODE_4449_length_257_cov_3.982456_g3986_i0 PRJNA407087 4449 257 3.982456 10.23491192 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 154 6.23e-33   NTclustered gi|470505078|ref|XM_004348480.1| 1257118 g3986 i0 77.778 12.2217898832685 261 50 100 8 1 257 3383 3127 Acanthamoeba castellanii str. Neff DNAdirected RNA polymerase, beta subunit (ACA1_158460), partial mRNA blastn 3141 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10618896 10618896 PRJNA407087_S_NODE_4869_length_239_cov_5.176190_g4406_i0 PRJNA407087 4869 239 5.17619 12.3710941 Cochliopodium minus 313997 Discosea other_Eukaryota 287 5.409999999999999e-73   NTclustered gi|330902891|gb|JF298270.1| 313997 g4406 i0 88.608 96.1087866108787 237 25 99 2 2 237 1053 818 Cochliopodium minus clone 5201 actin gene, partial cds blastn 22970 287 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
11893777 11893777 PRJNA407087_S_NODE_2710_length_381_cov_3.375000_g2248_i0 PRJNA407087 2710 381 3.375 12.85875 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 58.4 7.81e-4   NTclustered gi|470469416|ref|XM_004341948.1| 1257118 g2248 i0 83.077 0.170603674540682 65 9 17 2 179 242 884 821 Acanthamoeba castellanii str. Neff MORN repeatcontaining protein (ACA1_050500), partial mRNA blastn 65 58.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13835158 13835158 PRJNA407087_S_NODE_5451_length_219_cov_3.915789_g4988_i0 PRJNA407087 5451 219 3.915789 8.57557791 Ripella 1217112 Discosea other_Eukaryota 377 2.81e-100   NTclustered gi|2666517889|gb|PP259000.1| 1973050 g4988 i0 98.598 93.4520547945205 214 2 97 1 7 219 939 726 Ripella sp. strain CHIESE83/2 small subunit ribosomal RNA gene, partial sequence blastn 20466 377 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp.
22758607 22758607 PRJNA407087_S_NODE_8998_length_159_cov_2.892308_g8535_i0 PRJNA407087 8998 159 2.892308 4.59876972 Vannellidae 95227 Discosea other_Eukaryota 294 1.98e-75   NTclustered gi|62865939|gb|AY929914.1| 325077 g8535 i0 100 100.031446540881 159 0 100 0 1 159 408 250 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 15905 294 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
27612681 27612681 PRJNA407087_S_NODE_7544_length_177_cov_3.445946_g7081_i0 PRJNA407087 7544 177 3.445946 6.09932442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.2 3.97e-15   NR XP_004346619.1 1257118 g7081 i0 64.3 5.71186440677966 56 20 94.9 0 2 169 309 364 XP_004346619.1 phosphoenolpyruvate carboxykinase [Acanthamoeba castellanii str. Neff] diamond 1011 78.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29664478 29664478 PRJNA407087_S_NODE_5850_length_209_cov_3.038889_g5387_i0 PRJNA407087 5850 209 3.038889 6.35127801 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.6 8.97e-11   NR XP_004337827.1 1257118 g5387 i0 52.3 9.90430622009569 65 30 91.9 1 209 18 608 672 XP_004337827.1 acylCoA synthetase, putative [Acanthamoeba castellanii str. Neff] diamond 2070 66.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29854370 29854370 PRJNA407087_S_NODE_7251_length_181_cov_3.157895_g6788_i0 PRJNA407087 7251 181 3.157895 5.71578995 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.5 2.36e-19   NR XP_004339270.1 1257118 g6788 i0 70 1.98895027624309 60 18 99.4 0 2 181 233 292 XP_004339270.1 Tcomplex protein 1, eta subunit [Acanthamoeba castellanii str. Neff] diamond 360 90.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30106938 30106938 PRJNA407087_S_NODE_9952_length_151_cov_2.024590_g9489_i0 PRJNA407087 9952 151 2.02459 3.0571309 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 59.7 9.97e-9   NR XP_004335025.1 1257118 g9489 i0 62.9 2.94039735099338 35 13 69.5 0 151 47 211 245 XP_004335025.1 RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff] diamond 444 59.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30960180 30960180 PRJNA407087_S_NODE_2194_length_440_cov_3.829684_g1734_i0 PRJNA407087 2194 440 3.829684 16.8506096 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 183 8.049999999999998e-54   NR XP_004353078.1 1257118 g1734 i0 61.8 3.88636363636364 144 55 98.2 0 435 4 84 227 XP_004353078.1 meiotic recombinase Dmc1, putative [Acanthamoeba castellanii str. Neff] diamond 1710 183 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;