RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA407087" and tax_phylum = "Candidatus Giovannoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Giovannoniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA407087 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32193595 32193595 PRJNA407087_S_NODE_438_length_1150_cov_8.553078_g267_i0 PRJNA407087 438 1150 8.553078 98.360397 Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_ 2053557 Bacteria Bacteria 48.9 0.0373   NR OGF66689.1 1798332 g267 i0 26.1 0.42 161 105 40.4 4 666 1130 487 639 OGF66689.1 MAG: sodium-translocating pyrophosphatase [Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_43_32] diamond 483 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_43_32

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;