RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA407087", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA407087 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10618889 10618889 PRJNA407087_S_NODE_4229_length_267_cov_3.260504_g3766_i0 PRJNA407087 4229 267 3.260504 8.70554568 Fungi 4751 Fungi Fungi 131 5.28e-35   NR KAG5459033.1 278681 g3766 i0 65.9 15.8202247191011 88 30 98.9 0 266 3 173 260 KAG5459033.1 MAG: Dihydrolipoyl dehydrogenase mitochondrial precursor [Olpidium bornovanus] diamond 4224 131 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
28513312 28513312 PRJNA407087_S_NODE_9067_length_158_cov_5.317829_g8604_i0 PRJNA407087 9067 158 5.317829 8.40216982 Eukaryota 2759 Fungi Fungi 93.2 1.33e-20   NR KAG5460127.1 278681 g8604 i0 80.4 1.93670886075949 51 10 96.8 0 6 158 107 157 KAG5460127.1 MAG: hypothetical protein BJ554DRAFT_7864, partial [Olpidium bornovanus] diamond 306 93.2 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
30881965 30881965 PRJNA407087_S_NODE_4114_length_272_cov_5.769547_g3651_i0 PRJNA407087 4114 272 5.769547 15.69316784 root 1 Root_unresolved Root_unresolved 114 1.28e-27   NR KAG5463639.1 278681 g3651 i0 57.8 14.8125 90 38 99.3 0 2 271 177 266 KAG5463639.1 MAG: translation elongation factor [Olpidium bornovanus] diamond 4029 114 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;