RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA407087", tax_clade = "Stenosarchaea group" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

  • Stenosarchaea group · 2 ✖

bioproject 1

  • PRJNA407087 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27612684 27612684 PRJNA407087_S_NODE_8844_length_161_cov_2.022727_g8381_i0 PRJNA407087 8844 161 2.022727 3.25659047 Methanoregulaceae archaeon 2485498 Archaea Archaea 53.9 1.38e-6   NR HNJ81026.1 2485498 g8381 i0 62.2 0.68944099378882 37 14 68.9 0 17 127 603 639 HNJ81026.1 Ig-like domain-containing protein [Methanoregulaceae archaeon] diamond 111 53.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
28323734 28323734 PRJNA407087_S_NODE_7526_length_177_cov_4.175676_g7063_i0 PRJNA407087 7526 177 4.175676 7.39094652 root 1 Root_unresolved Root_unresolved 47 4.03e-4   NR MDO5845470.1 2058474 g7063 i0 41.5 4.06779661016949 53 31 89.8 0 6 164 148 200 MDO5845470.1 MIP family channel protein [Methanocorpusculum sp.] diamond 720 47 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;