RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA407087", tax_clade = "SAR86 cluster" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 1 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 1 ✖

bioproject 1

  • PRJNA407087 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32368681 32368681 PRJNA407087_S_NODE_4719_length_245_cov_3.819444_g4256_i0 PRJNA407087 4719 245 3.819444 9.3576378 Pseudomonadati 3379134 Bacteria Bacteria 92 8.04e-20   NR EJP72933.1 1123867 g4256 i0 60 13.5795918367347 80 32 98 0 3 242 153 232 EJP72933.1 MAG: NADH dehydrogenase [SAR86 cluster bacterium SAR86B] diamond 3327 92.4 0.995670995670996 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium SAR86B

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;