RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA407087", tax_clade = "Methanomada group" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA407087 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31845355 31845355 PRJNA407087_S_NODE_2697_length_381_cov_49.315341_g2235_i0 PRJNA407087 2697 381 49.315341 187.89144921 Methanocaldococcus villosus 667126 Archaea Archaea 96.3 1.95e-22   NR WP_004592618.1 667126 g2235 i0 45 0.874015748031496 111 43 87.4 2 379 47 48 140 WP_004592618.1 30S ribosomal protein S19e [Methanocaldococcus villosus] diamond 333 96.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus
32510202 32510202 PRJNA407087_S_NODE_2599_length_391_cov_54.980663_g2138_i0 PRJNA407087 2599 391 54.980663 214.97439233 Methanocaldococcus villosus 667126 Archaea Archaea 93.6 2.4600000000000003e-21   NR WP_004592618.1 667126 g2138 i0 43.2 0.851662404092072 111 45 85.2 2 389 57 48 140 WP_004592618.1 30S ribosomal protein S19e [Methanocaldococcus villosus] diamond 333 93.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;