RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA407087" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 11 ✖

bioproject 1

  • PRJNA407087 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4242057 4242057 PRJNA407087_S_NODE_4984_length_235_cov_2.339806_g4521_i0 PRJNA407087 4984 235 2.339806 5.4985441 root 1 Root_unresolved Root_unresolved 130 4.68e-33   NR KAL1495697.1 97485 g4521 i0 84.6 19.8 78 12 99.6 0 1 234 795 872 KAL1495697.1 hypothetical protein AB1Y20_016560 [Prymnesium parvum] diamond 4653 131 0.99236641221374 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
27675939 27675939 PRJNA407087_S_NODE_4164_length_270_cov_2.925311_g3701_i0 PRJNA407087 4164 270 2.925311 7.8983397 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 110 5.72e-26   NR KOO23673.1 1460289 g3701 i0 57.3 0.988888888888889 89 36 98.9 1 269 3 202 288 KOO23673.1 calcium-transporting ATPase endoplasmic reticulum-type-like protein [Chrysochromulina tobinii] diamond 267 110 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
27864973 27864973 PRJNA407087_S_NODE_6945_length_187_cov_1.822785_g6482_i0 PRJNA407087 6945 187 1.822785 3.40860795 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 72.4 6.280000000000002e-13   NR KAG8463656.1 2081491 g6482 i0 52.4 2.02139037433155 63 25 96.3 2 187 8 4382 4442 KAG8463656.1 hypothetical protein KFE25_003929 [Diacronema lutheri] diamond 378 72.4 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
28166058 28166058 PRJNA407087_S_NODE_8705_length_162_cov_2.774436_g8242_i0 PRJNA407087 8705 162 2.774436 4.49458632 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.1 2.18e-19   NR KAJ1619581.1 483367 g8242 i0 70.4 10.9444444444444 54 16 100 0 1 162 398 451 KAJ1619581.1 methionyl aminopeptidase 2 [Pavlovales sp. CCMP2436] diamond 1773 90.1 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436
28717734 28717734 PRJNA407087_S_NODE_2107_length_453_cov_10.825472_g835_i2 PRJNA407087 2107 453 10.825472 49.03938816 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 53.5 1.53e-5   NR XP_005763761.1 280463 g835 i2 36.2 0.768211920529801 116 59 75.5 4 96 437 2 104 XP_005763761.1 hypothetical protein EMIHUDRAFT_57004, partial [Emiliania huxleyi CCMP1516] diamond 348 53.5 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
29807747 29807747 PRJNA407087_S_NODE_5011_length_234_cov_3.185366_g4548_i0 PRJNA407087 5011 234 3.185366 7.45375644 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 68.9 1.36e-12   NR KAL1527875.1 97485 g4548 i0 47.4 3.03846153846154 78 40 98.7 1 1 231 45 122 KAL1527875.1 hypothetical protein AB1Y20_009251 [Prymnesium parvum] diamond 711 68.9 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31561006 31561006 PRJNA407087_S_NODE_2696_length_381_cov_60.954545_g2234_i0 PRJNA407087 2696 381 60.954545 232.23681645 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 89.4 3.67e-20   NR XP_005782836.1 280463 g2234 i0 50 0.803149606299213 102 47 79.5 2 36 338 16 114 XP_005782836.1 hypothetical protein EMIHUDRAFT_442529 [Emiliania huxleyi CCMP1516] diamond 306 89.4 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
31971966 31971966 PRJNA407087_S_NODE_10038_length_150_cov_2.619835_g9575_i0 PRJNA407087 10038 150 2.619835 3.9297525 Prymnesium parvum 97485 Haptophyta other_Eukaryota 42 0.0193   NR KAL1495937.1 97485 g9575 i0 34.8 0.92 46 30 92 0 2 139 99 144 KAL1495937.1 hypothetical protein AB1Y20_014579 [Prymnesium parvum] diamond 138 42 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
32098572 32098572 PRJNA407087_S_NODE_8718_length_162_cov_2.503759_g8255_i0 PRJNA407087 8718 162 2.503759 4.05608958 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 85.9 4.18e-18   NR XP_005776995.1 280463 g8255 i0 69.2 3.88888888888889 52 16 96.3 0 157 2 309 360 XP_005776995.1 hypothetical protein EMIHUDRAFT_427101 [Emiliania huxleyi CCMP1516] diamond 630 85.9 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
32635921 32635921 PRJNA407087_S_NODE_2700_length_381_cov_26.250000_g2238_i0 PRJNA407087 2700 381 26.25 100.0125 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 93.2 1.13e-21   NR XP_005782836.1 280463 g2238 i0 51 7.33858267716535 102 46 79.5 2 36 338 16 114 XP_005782836.1 hypothetical protein EMIHUDRAFT_442529 [Emiliania huxleyi CCMP1516] diamond 2796 93.2 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
32887874 32887874 PRJNA407087_S_NODE_4220_length_267_cov_4.457983_g3757_i0 PRJNA407087 4220 267 4.457983 11.90281461 Prymnesium parvum 97485 Haptophyta other_Eukaryota 118 4.22e-29   NR KAL1527885.1 97485 g3757 i0 65.9 0.921348314606742 82 28 92.1 0 266 21 164 245 KAL1527885.1 hypothetical protein AB1Y20_009261 [Prymnesium parvum] diamond 246 118 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;