RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA407087", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA407087 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31103089 31103089 PRJNA407087_S_NODE_8615_length_163_cov_2.813433_g8152_i0 PRJNA407087 8615 163 2.813433 4.58589579 FCB group 1783270 Bacteria Bacteria 42 0.0238   NR HVB30450.1 2026741 g8152 i0 37.3 1.63803680981595 51 31 93.9 1 1 153 238 287 HVB30450.1 S1/P1 nuclease [Gemmatimonadaceae bacterium] diamond 267 42.4 0.990566037735849 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31276071 31276071 PRJNA407087_S_NODE_8955_length_160_cov_1.648855_g8492_i0 PRJNA407087 8955 160 1.648855 2.638168 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42 0.0228   NR PYO87388.1 2026742 g8492 i0 72.7 0.4125 22 6 41.3 0 121 56 5 26 PYO87388.1 MAG: hypothetical protein DMD58_14985 [Gemmatimonadota bacterium] diamond 66 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;