RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA404067", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA404067 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28987181 28987181 PRJNA404067_P_NODE_43388_length_178_cov_4.153846_g43001_i0 PRJNA404067 43388 178 4.153846 7.39384588 Sulfolobaceae 118883 Archaea Archaea 41.2 0.046   NR WP_278465736.1 43080 g43001 i0 33.3 2.2247191011236 66 36 97.8 1 5 178 116 181 WP_278465736.1 class I SAM-dependent methyltransferase, partial [Saccharolobus islandicus] diamond 396 41.2 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus
32351943 32351943 PRJNA404067_P_NODE_20159_length_236_cov_2.605714_g19772_i0 PRJNA404067 20159 236 2.605714 6.14948504 Ignisphaera sp. 2268142 Archaea Archaea 73.6 1.1e-13   NR MCI4437591.1 2268142 g19772 i0 55.6 3.16525423728814 63 28 80.1 0 6 194 168 230 MCI4437591.1 hypothetical protein [Ignisphaera sp.] diamond 747 73.6 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;