RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA404067" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2965161 2965161 PRJNA404067_P_NODE_14483_length_273_cov_1.160377_g14096_i0 PRJNA404067 14483 273 1.160377 3.16782921 Grellamoeba robusta 690712 Evosea other_Eukaryota 300 8.11e-77   NTclustered gi|268549248|gb|GQ438740.1| 690712 g14096 i0 86.861 93.6849816849817 274 28 99 6 4 273 1583 1852 Amoebozoa sp. 4168 clone 111 small subunit ribosomal RNA gene, partial sequence blastn 25576 300 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Grellamoeba Grellamoeba robusta
2965355 2965355 PRJNA404067_P_NODE_28003_length_216_cov_0.890323_g27616_i0 PRJNA404067 28003 216 0.890323 1.92309768 Didymium environmental sample 1173723 Evosea other_Eukaryota 265 2.25e-66   NTclustered gi|407196931|gb|JX545305.1| 1173723 g27616 i0 88.889 38.8055555555556 216 23 99 1 2 216 114 329 Didymium environmental sample clone HCA_D08-36 28S ribosomal RNA gene, partial sequence blastn 8382 265 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae   Didymium environmental sample
16383593 16383593 PRJNA404067_P_NODE_16833_length_253_cov_16.411458_g16446_i0 PRJNA404067 16833 253 16.411458 41.52098874 Flamella 490353 Evosea other_Eukaryota 350 7.27e-92   NTclustered gi|163943979|gb|EU186023.1| 490516 g16446 i0 100 76.1778656126482 189 0 100 0 1 189 1708 1520 Flamella balnearia 18S ribosomal RNA gene, partial sequence blastn 19273 350 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella balnearia
16991957 16991957 PRJNA404067_P_NODE_16874_length_253_cov_1.916667_g16487_i0 PRJNA404067 16874 253 1.916667 4.84916751 Physarum polycephalum 5791 Evosea other_Eukaryota 364 2.5999999999999998e-96   NTclustered gi|3221|emb|V01159.1| 5791 g16487 i0 92.885 8.41897233201581 253 14 100 4 1 253 2037 2285 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 2130 364 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
24641070 24641070 PRJNA404067_P_NODE_30100_length_211_cov_1.400000_g29713_i0 PRJNA404067 30100 211 1.4 2.954 Diderma hemisphaericum 385442 Evosea other_Eukaryota 267 6.079999999999999e-67   NTclustered gi|2317681392|gb|OP650759.1| 385442 g29713 i0 96.875 79.5924170616114 160 4 76 1 52 211 422 264 Diderma hemisphaericum strain MA-Fungi 90974 small subunit ribosomal RNA gene, partial sequence blastn 16794 267 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma hemisphaericum
26758804 26758804 PRJNA404067_P_NODE_38061_length_201_cov_4.485714_g37674_i0 PRJNA404067 38061 201 4.485714 9.01628514 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 70.1 1.68e-13   NR XP_647508.1 352472 g37674 i0 64.8 2.41791044776119 54 19 80.6 0 200 39 67 120 XP_647508.1 hypothetical protein DDB_G0268038 [Dictyostelium discoideum AX4] diamond 486 70.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;