RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA404067" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26726873 26726873 PRJNA404067_P_NODE_33901_length_206_cov_0.882759_g33514_i0 PRJNA404067 33901 206 0.882759 1.81848354 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 52.8 3.84e-6   NR MEN9582611.1 2762014 g33514 i0 51.1 0.655339805825243 45 22 65.5 0 14 148 163 207 MEN9582611.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 135 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
26948792 26948792 PRJNA404067_P_NODE_29582_length_212_cov_1.490066_g29195_i0 PRJNA404067 29582 212 1.490066 3.15893992 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 48.9 9.03e-5   NR MBX4189921.1 2762014 g29195 i0 64.5 0.438679245283019 31 11 43.9 0 4 96 153 183 MBX4189921.1 class I SAM-dependent methyltransferase [Candidatus Parcubacteria bacterium] diamond 93 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
27486254 27486254 PRJNA404067_P_NODE_36623_length_203_cov_0.901408_g36236_i0 PRJNA404067 36623 203 0.901408 1.82985824 Parcubacteria bacterium C7867- 2762014 Bacteria Bacteria 119 1.4899999999999998e-30   NR KND47588.1 1659200 g36236 i0 91 2.97044334975369 67 6 99 0 2 202 286 352 KND47588.1 MAG: cell division protein FtsW [Parcubacteria bacterium C7867-006] diamond 603 119 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium C7867-006
27928270 27928270 PRJNA404067_P_NODE_13085_length_289_cov_2.526316_g12698_i0 PRJNA404067 13085 289 2.526316 7.30105324 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 117 2.37e-29   NR MBX4201077.1 2762014 g12698 i0 73.8 1.7439446366782 84 22 87.2 0 36 287 159 242 MBX4201077.1 type IV pilus assembly protein PilM [Candidatus Parcubacteria bacterium] diamond 504 117 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
28938731 28938731 PRJNA404067_P_NODE_19548_length_238_cov_1.915254_g19161_i0 PRJNA404067 19548 238 1.915254 4.55830452 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 141 3.4099999999999996e-37   NR MFM2381381.1 2762014 g19161 i0 84.8 1.97899159663866 79 12 99.6 0 238 2 249 327 MFM2381381.1 Ribonuclease [Candidatus Parcubacteria bacterium] diamond 471 141 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29886058 29886058 PRJNA404067_P_NODE_38211_length_201_cov_1.792857_g37824_i0 PRJNA404067 38211 201 1.792857 3.60364257 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 111 3.520000000000001e-27   NR RJR13241.1 2762014 g37824 i0 89.4 1.97014925373134 66 7 98.5 0 2 199 4 69 RJR13241.1 MAG: preprotein translocase subunit SecY [Candidatus Parcubacteria bacterium] diamond 396 111 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32288812 32288812 PRJNA404067_P_NODE_36459_length_203_cov_1.077465_g36072_i0 PRJNA404067 36459 203 1.077465 2.18725395 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 69.3 9.21e-12   NR MEN9561326.1 2762014 g36072 i0 53.7 0.990147783251232 67 31 99 0 3 203 56 122 MEN9561326.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 201 69.3 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;