RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA404067", tax_kingdom = "Metazoa" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2965400 2965400 PRJNA404067_P_NODE_30923_length_209_cov_2.027027_g30536_i0 PRJNA404067 30923 209 2.027027 4.23648643 Mytilus edulis 6550 Mollusca Mollusca 211 2.86e-50   NTclustered gi|2912443538|ref|XM_071272861.1| 6550 g30536 i0 96.85 1.82296650717703 127 3 60 1 84 209 3619 3493 PREDICTED: Mytilus edulis multidrug resistance-associated protein 1-like (LOC139487782), mRNA blastn 381 211 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
13168670 13168670 PRJNA404067_P_NODE_6951_length_453_cov_53.877551_g6574_i0 PRJNA404067 6951 453 53.877551 244.06530603 Idiosepius paradoxus 294707 Mollusca Mollusca 60.2 2.62e-4   NTclustered gi|325504932|dbj|AB586703.1| 294707 g6574 i0 100 1.05298013245033 32 0 7 0 391 422 37 6 Idiosepius paradoxus cenG mRNA for centaurin gamma homolog, complete cds blastn 477 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda   Idiosepiidae Idiosepius Idiosepius paradoxus
29128324 29128324 PRJNA404067_P_NODE_39909_length_197_cov_3.507353_g39522_i0 PRJNA404067 39909 197 3.507353 6.90948541 Mytilus galloprovincialis 29158 Mollusca Mollusca 43.9 0.00353   NR VDI12751.1 29158 g39522 i0 37.7 0.928934010152284 61 38 92.9 0 196 14 79 139 VDI12751.1 fatty acid-binding protein 7, brain [Mytilus galloprovincialis] diamond 183 43.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus galloprovincialis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;