RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA404067", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 7 ✖

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJNA404067 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28906843 28906843 PRJNA404067_P_NODE_44728_length_169_cov_4.148148_g44341_i0 PRJNA404067 44728 169 4.148148 7.01037012 Armatimonadota bacterium 2033014 Bacteria Bacteria 79.3 2.2e-17   NR MBS1702077.1 2033014 g44341 i0 66.1 2.98224852071006 56 19 99.4 0 168 1 36 91 MBS1702077.1 winged helix-turn-helix transcriptional regulator [Armatimonadota bacterium] diamond 504 79.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29002213 29002213 PRJNA404067_P_NODE_26388_length_219_cov_1.620253_g26001_i0 PRJNA404067 26388 219 1.620253 3.54835407 Armatimonadota bacterium 2033014 Bacteria Bacteria 69.3 3.03e-13   NR MBS1724766.1 2033014 g26001 i0 68.1 1.26027397260274 47 15 64.4 0 142 2 1 47 MBS1724766.1 MmcQ/YjbR family DNA-binding protein [Armatimonadota bacterium] diamond 276 69.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29159845 29159845 PRJNA404067_P_NODE_34449_length_205_cov_1.340278_g34062_i0 PRJNA404067 34449 205 1.340278 2.7475699 Armatimonadota bacterium 2033014 Bacteria Bacteria 72 2.45e-13   NR MCC2667766.1 2033014 g34062 i0 70.2 0.68780487804878 47 14 68.8 0 204 64 171 217 MCC2667766.1 iron (metal) dependent repressor, DtxR family [Armatimonadota bacterium] diamond 141 72 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29159848 29159848 PRJNA404067_P_NODE_37369_length_202_cov_1.326241_g36982_i0 PRJNA404067 37369 202 1.326241 2.67900682 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 52.4 8.25e-6   NR MDX2064501.1 2682144 g36982 i0 53.3 4.96039603960396 60 21 89.1 2 21 200 6 58 MDX2064501.1 glucoamylase family protein [Fimbriimonadaceae bacterium] diamond 1002 52.4 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
30155053 30155053 PRJNA404067_P_NODE_24852_length_223_cov_1.820988_g24465_i0 PRJNA404067 24852 223 1.820988 4.06080324 Bacteria 2 Bacteria Bacteria 89 7.25e-19   NR KAA0232136.1 2033014 g24465 i0 57.5 4.82959641255605 73 31 98.2 0 222 4 196 268 KAA0232136.1 MAG: penicillin-binding protein 2, partial [Armatimonadota bacterium] diamond 1077 89 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31180937 31180937 PRJNA404067_P_NODE_23975_length_225_cov_4.170732_g23588_i0 PRJNA404067 23975 225 4.170732 9.384147 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 69.3 1.84e-12   NR MBI1756261.1 1005039 g23588 i0 45.8 0.786666666666667 59 32 78.7 0 46 222 30 88 MBI1756261.1 sigma-70 family RNA polymerase sigma factor [Fimbriimonas ginsengisoli] diamond 177 69.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
31371243 31371243 PRJNA404067_P_NODE_44916_length_168_cov_4.158879_g44529_i0 PRJNA404067 44916 168 4.158879 6.98691672 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 51.6 1.94e-6   NR MBI1755905.1 1005039 g44529 i0 48.4 3.05357142857143 62 24 96.4 1 167 6 55 116 MBI1755905.1 hypothetical protein [Fimbriimonas ginsengisoli] diamond 513 51.6 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;