RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA404067" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA404067 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13835030 13835030 PRJNA404067_P_NODE_45591_length_164_cov_4.475728_g45204_i0 PRJNA404067 45591 164 4.475728 7.34019392 root 1 Root_unresolved Root_unresolved 292 7.41e-75   NTclustered gi|309951580|gb|HQ224926.1| 34034 g45204 i0 98.78 99.9817073170732 164 2 100 0 1 164 443 606 Uncultured delta proteobacterium clone 2-26 16S ribosomal RNA gene, partial sequence blastn 16397 292 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
16992378 16992378 PRJNA404067_P_NODE_41554_length_190_cov_2.798450_g41167_i0 PRJNA404067 41554 190 2.79845 5.317055 uncultured delta proteobacterium 34034 Bacteria Bacteria 196 7.13e-46   NTclustered gi|374854163|dbj|AP011765.1| 34034 g41167 i0 99.083 105.631578947368 109 1 57 0 26 134 13792 13900 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 20070 196 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;