RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA404067", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA404067 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26663603 26663603 PRJNA404067_P_NODE_23041_length_228_cov_0.988024_g22654_i0 PRJNA404067 23041 228 0.988024 2.25269472 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 59.3 3.41e-8   NR MDD5449158.1 2035772 g22654 i0 44.4 0.828947368421053 63 35 82.9 0 6 194 188 250 MDD5449158.1 class I SAM-dependent methyltransferase [Candidatus Omnitrophota bacterium] diamond 189 59.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
26997076 26997076 PRJNA404067_P_NODE_42142_length_188_cov_2.433071_g41755_i0 PRJNA404067 42142 188 2.433071 4.57417348 PVC group 1783257 Bacteria Bacteria 47.4 4.17e-4   NR OGX39949.1 1801863 g41755 i0 57.6 2.18617021276596 33 14 52.7 0 149 51 541 573 OGX39949.1 MAG: threonine--tRNA ligase [Omnitrophica WOR_2 bacterium RIFCSPLOWO2_01_FULL_41_12] diamond 411 47.8 0.99163179916318 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium RIFCSPLOWO2_01_FULL_41_12
27707699 27707699 PRJNA404067_P_NODE_38944_length_201_cov_0.878571_g38557_i0 PRJNA404067 38944 201 0.878571 1.76592771 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 62.4 2.53e-9   NR MFA6599473.1 2035772 g38557 i0 47 0.985074626865672 66 35 98.5 0 200 3 7868 7933 MFA6599473.1 dockerin type I domain-containing protein [Candidatus Omnitrophota bacterium] diamond 198 62.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27802102 27802102 PRJNA404067_P_NODE_35204_length_204_cov_1.468531_g34817_i0 PRJNA404067 35204 204 1.468531 2.99580324 Candidatus Omnitrophica bacterium CG1_ 2035772 Bacteria Bacteria 80.1 5.09e-16   NR OIO39581.1 1805288 g34817 i0 65.5 0.808823529411765 55 19 80.9 0 199 35 91 145 OIO39581.1 MAG: hypothetical protein AUJ72_00410 [Candidatus Omnitrophica bacterium CG1_02_46_14] diamond 165 80.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophica bacterium CG1_02_46_14
28401869 28401869 PRJNA404067_P_NODE_41166_length_192_cov_2.030534_g40779_i0 PRJNA404067 41166 192 2.030534 3.89862528 Omnitrophica bacterium RIFCSPLOWO2_ 2035772 Bacteria Bacteria 84 5.41e-17   NR OGW84973.1 1801827 g40779 i0 61.9 0.984375 63 24 98.4 0 191 3 57 119 OGW84973.1 MAG: murein biosynthesis integral membrane protein MurJ [Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_10b] diamond 189 84 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_10b
28843729 28843729 PRJNA404067_P_NODE_32888_length_207_cov_0.910959_g32501_i0 PRJNA404067 32888 207 0.910959 1.88568513 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 124 2.28e-34   NR MBM3244267.1 2035772 g32501 i0 82.4 0.985507246376812 68 12 98.6 0 205 2 51 118 MBM3244267.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Candidatus Omnitrophota bacterium] diamond 204 124 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31180945 31180945 PRJNA404067_P_NODE_35775_length_204_cov_0.860140_g35388_i0 PRJNA404067 35775 204 0.86014 1.7546856 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 56.2 3.44e-7   NR MBI3996411.1 2035772 g35388 i0 40.9 0.970588235294118 66 39 97.1 0 203 6 76 141 MBI3996411.1 endonuclease/exonuclease/phosphatase family protein [Candidatus Omnitrophota bacterium] diamond 198 56.2 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;