RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA404067", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA404067 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10009643 10009643 PRJNA404067_P_NODE_5928_length_532_cov_2.282378_g5558_i0 PRJNA404067 5928 532 2.282378 12.14225096 Metazoa 33208 Platyhelminthes Platyhelminthes 976 0   NTclustered gi|60687563|gb|AY914894.1| 6182 g5558 i0 99.812 99.9962406015038 531 1 99 0 1 531 535 5 Schistosoma japonicum unknown mRNA blastn 53198 977 0.998976458546571 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
22758549 22758549 PRJNA404067_P_NODE_7538_length_424_cov_5.214876_g7160_i0 PRJNA404067 7538 424 5.214876 22.11107424 Monogenea 37945 Platyhelminthes Platyhelminthes 124 8.54e-24   NTclustered gi|28273281|gb|AY157169.1| 82849 g7160 i0 85.714 38.5188679245283 119 15 28 2 133 251 2453 2337 Diclidophora denticulata 28S large subunit ribosomal RNA gene, partial sequence blastn 16332 124 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Mazocraeidea Diclidophoridae Diclidophora Diclidophora denticulata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;