RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA404067", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA404067 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6792578 6792578 PRJNA404067_P_NODE_41006_length_192_cov_41.351145_g40619_i0 PRJNA404067 41006 192 41.351145 79.3941984 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g40619 i0 100 0.145833333333333 28 0 15 0 165 192 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
16992281 16992281 PRJNA404067_P_NODE_35994_length_203_cov_7.035211_g35607_i0 PRJNA404067 35994 203 7.035211 14.28147833 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g35607 i0 100 0.137931034482759 28 0 14 0 159 186 51 24 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
29285799 29285799 PRJNA404067_P_NODE_17709_length_247_cov_2.596774_g17322_i0 PRJNA404067 17709 247 2.596774 6.41403178 Strongylus vulgaris 40348 Nematoda Nematoda 49.3 1.95e-4   NR VDM65508.1 40348 g17322 i0 58.3 0.728744939271255 60 22 72.9 1 29 208 573 629 VDM65508.1 unnamed protein product, partial [Strongylus vulgaris] diamond 180 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
30012408 30012408 PRJNA404067_P_NODE_43771_length_175_cov_7.684211_g43384_i0 PRJNA404067 43771 175 7.684211 13.44736925 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 50.4 2.87e-5   NR CAD6189548.1 2777116 g43384 i0 46.2 0.891428571428571 52 27 89.1 1 168 13 64 114 CAD6189548.1 unnamed protein product [Caenorhabditis auriculariae] diamond 156 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
30170083 30170083 PRJNA404067_P_NODE_41272_length_191_cov_3.892308_g40885_i0 PRJNA404067 41272 191 3.892308 7.43430828 Teladorsagia circumcincta 45464 Nematoda Nematoda 63.5 4.15e-11   NR PIO76633.1 45464 g40885 i0 72.2 5.27748691099476 36 10 56.5 0 189 82 32 67 PIO76633.1 ribosomal protein S14p/S29e [Teladorsagia circumcincta] diamond 1008 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta
30802061 30802061 PRJNA404067_P_NODE_13414_length_285_cov_4.401786_g13027_i0 PRJNA404067 13414 285 4.401786 12.5450901 Auanema sp. JU1783 2878363 Nematoda Nematoda 62.4 4.79e-9   NR CAI4221212.1 2878363 g13027 i0 75.8 0.347368421052632 33 8 34.7 0 283 185 243 275 CAI4221212.1 unnamed protein product [Auanema sp. JU1783] diamond 99 62.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;