RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA404067", tax_clade = "Methanomada group" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA404067 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31244450 31244450 PRJNA404067_P_NODE_43115_length_180_cov_5.689076_g42728_i0 PRJNA404067 43115 180 5.689076 10.2403368 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 53.5 2.46e-6   NR WP_295030335.1 253161 g42728 i0 100 0.433333333333333 26 0 43.3 0 79 2 102 127 WP_295030335.1 hypothetical protein [uncultured Methanobrevibacter sp.] diamond 78 53.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32541799 32541799 PRJNA404067_P_NODE_23259_length_227_cov_2.734940_g22872_i0 PRJNA404067 23259 227 2.73494 6.2083138 Methanobrevibacter sp. 66852 Archaea Archaea 112 1.24e-26   NR MBO7713382.1 66852 g22872 i0 68.5 0.964757709251101 73 23 96.5 0 223 5 54 126 MBO7713382.1 hypothetical protein [Methanobrevibacter sp.] diamond 219 112 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;