RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA404067", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA404067 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28875471 28875471 PRJNA404067_P_NODE_31848_length_208_cov_1.401361_g31461_i0 PRJNA404067 31848 208 1.401361 2.91483088 Fibrobacteria bacterium 2725311 Bacteria Bacteria 75.9 4.09e-14   NR HLU70417.1 2725311 g31461 i0 54.9 1.02403846153846 71 30 99.5 1 1 207 313 383 HLU70417.1 hypothetical protein [Fibrobacteria bacterium] diamond 213 75.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
30265306 30265306 PRJNA404067_P_NODE_16752_length_254_cov_1.860104_g16365_i0 PRJNA404067 16752 254 1.860104 4.72466416 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 75.5 9.54e-14   NR MBN1980442.1 2663014 g16365 i0 51.2 0.968503937007874 82 39 96.9 1 246 1 31 111 MBN1980442.1 FIST C-terminal domain-containing protein [Chitinivibrionales bacterium] diamond 246 75.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;