RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA404067", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA404067 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7459518 7459518 PRJNA404067_P_NODE_6486_length_486_cov_3.588235_g6110_i0 PRJNA404067 6486 486 3.588235 17.4388221 Pseudomonadati 3379134 Bacteria Bacteria 204 1.2399999999999998e-47   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g6110 i0 95.349 13.7283950617284 129 5 28 1 258 385 28732 28860 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 6672 206 0.990291262135922 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
28086033 28086033 PRJNA404067_P_NODE_40865_length_193_cov_2.439394_g40478_i0 PRJNA404067 40865 193 2.439394 4.70803042 Chlorobiota bacterium 2268192 Bacteria Bacteria 41.6 0.0395   NR MBL7989038.1 2268192 g40478 i0 61.3 0.481865284974093 31 12 48.2 0 93 1 30 60 MBL7989038.1 hypothetical protein [Chlorobiota bacterium] diamond 93 41.6 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;