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contig_metadata

23 rows where bioproject = "PRJNA404067" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 23 ✖

bioproject 1

  • PRJNA404067 · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
414809 414809 PRJNA404067_P_NODE_42481_length_186_cov_2.624000_g42094_i0 PRJNA404067 42481 186 2.624 4.88064 Vannella septentrionalis 197531 Discosea other_Eukaryota 152 1.52e-32   NTclustered gi|300078499|gb|GU001161.1| 197531 g42094 i0 98.824 46.247311827957 85 1 94 0 50 134 2219 2135 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8602 152 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
2965150 2965150 PRJNA404067_P_NODE_13363_length_286_cov_1.786667_g12976_i0 PRJNA404067 13363 286 1.786667 5.10986762 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 503 6.069999999999998e-138   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g12976 i0 98.264 8.57692307692308 288 3 100 1 1 286 299 12 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 2453 503 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
2965161 2965161 PRJNA404067_P_NODE_14483_length_273_cov_1.160377_g14096_i0 PRJNA404067 14483 273 1.160377 3.16782921 Grellamoeba robusta 690712 Evosea other_Eukaryota 300 8.11e-77   NTclustered gi|268549248|gb|GQ438740.1| 690712 g14096 i0 86.861 93.6849816849817 274 28 99 6 4 273 1583 1852 Amoebozoa sp. 4168 clone 111 small subunit ribosomal RNA gene, partial sequence blastn 25576 300 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Grellamoeba Grellamoeba robusta
2965355 2965355 PRJNA404067_P_NODE_28003_length_216_cov_0.890323_g27616_i0 PRJNA404067 28003 216 0.890323 1.92309768 Didymium environmental sample 1173723 Evosea other_Eukaryota 265 2.25e-66   NTclustered gi|407196931|gb|JX545305.1| 1173723 g27616 i0 88.889 38.8055555555556 216 23 99 1 2 216 114 329 Didymium environmental sample clone HCA_D08-36 28S ribosomal RNA gene, partial sequence blastn 8382 265 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae   Didymium environmental sample
6792211 6792211 PRJNA404067_P_NODE_19806_length_237_cov_22.352273_g19419_i0 PRJNA404067 19806 237 22.352273 52.97488701 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 433 6.5e-117   NTclustered gi|259906315|gb|GQ844618.1| 590481 g19419 i0 99.578 83.1518987341772 237 1 100 0 1 237 385 149 Uncultured Amoebozoa clone TB0-37 18S ribosomal RNA gene, partial sequence blastn 19707 433 1 Eukaryota Amoebozoa             uncultured Amoebozoa
8733950 8733950 PRJNA404067_P_NODE_11367_length_315_cov_15.492126_g10982_i0 PRJNA404067 11367 315 15.492126 48.8001969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 364 3.3299999999999986e-96   NTclustered gi|54306228|gb|AY626163.1| 297386 g10982 i0 95.982 68.5174603174603 224 9 71 0 92 315 615 392 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 21583 364 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
9342625 9342625 PRJNA404067_P_NODE_17628_length_248_cov_1.048128_g17241_i0 PRJNA404067 17628 248 1.048128 2.59935744 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 363 9.119999999999997e-96   NTclustered gi|399532124|gb|JQ627408.1| 590481 g17241 i0 93.145 95.5443548387097 248 15 99 2 1 247 1104 858 Uncultured Amoebozoa clone B1_7_1E_85 small subunit ribosomal RNA gene, partial sequence blastn 23695 363 1 Eukaryota Amoebozoa             uncultured Amoebozoa
12560153 12560153 PRJNA404067_P_NODE_42030_length_188_cov_8.543307_g41643_i0 PRJNA404067 42030 188 8.543307 16.06141716 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 326 8.6e-85   NTclustered gi|441475833|emb|FN562425.4| 688089 g41643 i0 97.884 12.0425531914894 189 3 100 1 1 188 356 544 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 2264 326 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
13168325 13168325 PRJNA404067_P_NODE_24791_length_223_cov_3.641975_g24404_i0 PRJNA404067 24791 223 3.641975 8.12160425 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 401 1.7099999999999992e-107   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g24404 i0 99.103 16.9551569506726 223 2 100 0 1 223 882 1104 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 3781 401 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
13834683 13834683 PRJNA404067_P_NODE_15171_length_266_cov_1.985366_g14784_i0 PRJNA404067 15171 266 1.985366 5.28107356 Vermamoeba 1260114 Tubulinea other_Eukaryota 459 1.2299999999999998e-124   NTclustered gi|909719645|gb|KT185625.1| 5778 g14784 i0 97.744 3 266 6 100 0 1 266 5350 5085 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 798 459 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15717571 15717571 PRJNA404067_P_NODE_44353_length_171_cov_5.654545_g43966_i0 PRJNA404067 44353 171 5.654545 9.66927195 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 313 5.95e-81   NTclustered gi|909719645|gb|KT185625.1| 5778 g43966 i0 100 83.6783625730994 169 0 99 0 3 171 4858 4690 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14309 313 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16383589 16383589 PRJNA404067_P_NODE_16413_length_256_cov_2.835897_g16026_i0 PRJNA404067 16413 256 2.835897 7.25989632 Tubulinea 555369 Tubulinea other_Eukaryota 473 4.189999999999999e-129   NTclustered gi|399764177|gb|JQ271688.1| 5778 g16026 i0 100 100 256 0 100 0 1 256 141 396 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 25600 473 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16383593 16383593 PRJNA404067_P_NODE_16833_length_253_cov_16.411458_g16446_i0 PRJNA404067 16833 253 16.411458 41.52098874 Flamella 490353 Evosea other_Eukaryota 350 7.27e-92   NTclustered gi|163943979|gb|EU186023.1| 490516 g16446 i0 100 76.1778656126482 189 0 100 0 1 189 1708 1520 Flamella balnearia 18S ribosomal RNA gene, partial sequence blastn 19273 350 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella balnearia
16383704 16383704 PRJNA404067_P_NODE_24873_length_223_cov_1.623457_g24486_i0 PRJNA404067 24873 223 1.623457 3.62030911 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 374 3.72e-99   NTclustered gi|300078496|gb|GU001158.1| 5778 g24486 i0 96.861 44.2017937219731 223 7 100 0 1 223 1221 999 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9857 374 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16991957 16991957 PRJNA404067_P_NODE_16874_length_253_cov_1.916667_g16487_i0 PRJNA404067 16874 253 1.916667 4.84916751 Physarum polycephalum 5791 Evosea other_Eukaryota 364 2.5999999999999998e-96   NTclustered gi|3221|emb|V01159.1| 5791 g16487 i0 92.885 8.41897233201581 253 14 100 4 1 253 2037 2285 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 2130 364 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
18266100 18266100 PRJNA404067_P_NODE_19235_length_239_cov_4.157303_g18848_i0 PRJNA404067 19235 239 4.157303 9.93595417 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 412 8.549999999999998e-111   NTclustered gi|330902861|gb|JF298256.1| 1017091 g18848 i0 97.917 71.9707112970711 240 2 100 3 1 239 516 279 Cochliopodium larifeili clone 907 18S ribosomal RNA gene, partial sequence blastn 17201 412 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
20816507 20816507 PRJNA404067_P_NODE_41377_length_191_cov_2.176923_g40990_i0 PRJNA404067 41377 191 2.176923 4.15792293 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 300 5.31e-77   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g40990 i0 95.312 26.4607329842932 192 3 100 4 1 191 220 406 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 5054 300 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
24032917 24032917 PRJNA404067_P_NODE_14379_length_274_cov_1.197183_g13992_i0 PRJNA404067 14379 274 1.197183 3.28028142 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 119 4.26e-30   NR NP_042542.1 5755 g13992 i0 76.5 0.930656934306569 85 19 93.1 1 2 256 139 222 NP_042542.1 NADH dehydrogenasesubunit 1 [Acanthamoeba castellanii] diamond 255 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24641070 24641070 PRJNA404067_P_NODE_30100_length_211_cov_1.400000_g29713_i0 PRJNA404067 30100 211 1.4 2.954 Diderma hemisphaericum 385442 Evosea other_Eukaryota 267 6.079999999999999e-67   NTclustered gi|2317681392|gb|OP650759.1| 385442 g29713 i0 96.875 79.5924170616114 160 4 76 1 52 211 422 264 Diderma hemisphaericum strain MA-Fungi 90974 small subunit ribosomal RNA gene, partial sequence blastn 16794 267 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma hemisphaericum
26758804 26758804 PRJNA404067_P_NODE_38061_length_201_cov_4.485714_g37674_i0 PRJNA404067 38061 201 4.485714 9.01628514 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 70.1 1.68e-13   NR XP_647508.1 352472 g37674 i0 64.8 2.41791044776119 54 19 80.6 0 200 39 67 120 XP_647508.1 hypothetical protein DDB_G0268038 [Dictyostelium discoideum AX4] diamond 486 70.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
26758805 26758805 PRJNA404067_P_NODE_38781_length_201_cov_0.914286_g38394_i0 PRJNA404067 38781 201 0.914286 1.83771486 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.4 0.00233   NR XP_004337724.1 1257118 g38394 i0 36.7 0.73134328358209 49 31 73.1 0 3 149 362 410 XP_004337724.1 uncharacterized protein ACA1_378610 [Acanthamoeba castellanii str. Neff] diamond 147 45.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27328430 27328430 PRJNA404067_P_NODE_40783_length_193_cov_4.606061_g40396_i0 PRJNA404067 40783 193 4.606061 8.88969773 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57 1.12e-8   NR XP_004334523.1 1257118 g40396 i0 92.3 0.404145077720207 26 2 40.4 0 188 111 69 94 XP_004334523.1 ribosomal protein s27, putative [Acanthamoeba castellanii str. Neff] diamond 78 57 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29412157 29412157 PRJNA404067_P_NODE_6529_length_483_cov_4.305687_g6152_i0 PRJNA404067 6529 483 4.305687 20.79646821 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 69.3 2.54e-10   NR XP_004338928.1 1257118 g6152 i0 64.6 0.608695652173913 48 17 29.8 0 76 219 591 638 XP_004338928.1 long chain acylcoA synthetase [Acanthamoeba castellanii str. Neff] diamond 294 69.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;