RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA401346" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA401346 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24640650 24640650 PRJNA401346_P_NODE_5340_length_230_cov_1.136095_g5319_i0 PRJNA401346 5340 230 1.136095 2.6130185 Bacteria 2 Bacteria Bacteria 100 1.6400000000000001e-22   NR MEM7315780.1 2026780 g5319 i0 65.3 22.6304347826087 75 26 97.8 0 4 228 426 500 MEM7315780.1 sodium-translocating pyrophosphatase [Planctomycetota bacterium] diamond 5205 101 0.99009900990099 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28433506 28433506 PRJNA401346_P_NODE_6346_length_209_cov_0.864865_g6325_i0 PRJNA401346 6346 209 0.864865 1.80756785 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 145 1.11e-38   NR MCP4096080.1 2026779 g6325 i0 100 0.990430622009569 69 0 99 0 2 208 223 291 MCP4096080.1 hypothetical protein [Planctomycetaceae bacterium] diamond 207 145 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;