RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA401346" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA401346 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28433507 28433507 PRJNA401346_P_NODE_7626_length_205_cov_0.888889_g7605_i0 PRJNA401346 7626 205 0.888889 1.82222245 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.1 4.61e-7   NR XP_004340116.1 1257118 g7605 i0 43.1 0.951219512195122 65 37 95.1 0 2 196 35 99 XP_004340116.1 microsomal signal peptidase 25 kda subunit (spc25) protein [Acanthamoeba castellanii str. Neff] diamond 195 55.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29696005 29696005 PRJNA401346_P_NODE_7390_length_205_cov_1.777778_g7369_i0 PRJNA401346 7390 205 1.777778 3.6444449 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 105 1.55e-27   NR 1PRQ_A 5755 g7369 i0 71.2 0.965853658536585 66 19 96.6 0 3 200 60 125 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 198 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;