RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA401346" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA401346 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29839368 29839368 PRJNA401346_P_NODE_6991_length_207_cov_0.876712_g6970_i0 PRJNA401346 6991 207 0.876712 1.81479384 Allomyces 28581 Fungi Fungi 116 4.49e-29   NR KAJ3358607.1 64505 g6970 i0 84.1 3 69 11 100 0 1 207 66 134 KAJ3358607.1 ABC transporter AbcH.1 [Allomyces javanicus] diamond 621 117 0.991452991452991 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus
31434183 31434183 PRJNA401346_P_NODE_5976_length_214_cov_1.607843_g5955_i0 PRJNA401346 5976 214 1.607843 3.44078402 Paraphysoderma sedebokerense 1500003 Fungi Fungi 77.4 1.67e-16   NR KAI9137792.1 1500003 g5955 i0 66.7 0.799065420560748 57 19 79.9 0 177 7 4 60 KAI9137792.1 ribosomal protein L36e [Paraphysoderma sedebokerense] diamond 171 77.4 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
32130405 32130405 PRJNA401346_P_NODE_5458_length_227_cov_1.228916_g5437_i0 PRJNA401346 5458 227 1.228916 2.78963932 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 76.3 1.2e-14   NR KNE63655.1 578462 g5437 i0 58.1 0.977973568281938 74 31 97.8 0 225 4 119 192 KNE63655.1 triose-phosphate isomerase [Allomyces macrogynus ATCC 38327] diamond 222 76.3 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;