RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA401346" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA401346 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26917248 26917248 PRJNA401346_P_NODE_4602_length_248_cov_1.443850_g4581_i0 PRJNA401346 4602 248 1.44385 3.580748 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 125 7.55e-32   NR MCB0368368.1 2053517 g4581 i0 70.7 0.991935483870968 82 24 99.2 0 1 246 108 189 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 246 125 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29696004 29696004 PRJNA401346_P_NODE_7090_length_207_cov_0.863014_g7069_i0 PRJNA401346 7090 207 0.863014 1.78643898 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 50.4 1.83e-5   NR MCB0369156.1 2053517 g7069 i0 38.2 1.49275362318841 55 34 79.7 0 173 9 98 152 MCB0369156.1 RICIN domain-containing protein [Bdellovibrionales bacterium] diamond 309 50.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30233395 30233395 PRJNA401346_P_NODE_792_length_517_cov_1.528509_g771_i0 PRJNA401346 792 517 1.528509 7.90239153 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 216 1.73e-68   NR MCB0369154.1 2053517 g771 i0 70.8 0.835589941972921 144 42 83.6 0 515 84 15 158 MCB0369154.1 C39 family peptidase [Bdellovibrionales bacterium] diamond 432 216 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30486212 30486212 PRJNA401346_P_NODE_2413_length_323_cov_1.099237_g2392_i0 PRJNA401346 2413 323 1.099237 3.55053551 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 152 1.78e-44   NR MCB0369646.1 2053517 g2392 i0 88 0.770897832817337 83 10 77.1 0 73 321 87 169 MCB0369646.1 50S ribosomal protein L22 [Bdellovibrionales bacterium] diamond 249 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31592600 31592600 PRJNA401346_P_NODE_3816_length_269_cov_3.076923_g3795_i0 PRJNA401346 3816 269 3.076923 8.27692287 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 108 1.35e-28   NR MCB0369232.1 2053517 g3795 i0 54.4 0.8810408921933092 79 36 88.1 0 267 31 3 81 MCB0369232.1 hypothetical protein [Bdellovibrionales bacterium] diamond 237 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32003725 32003725 PRJNA401346_P_NODE_2518_length_317_cov_1.425781_g2497_i0 PRJNA401346 2518 317 1.425781 4.51972577 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 107 7.36e-25   NR MCB0368268.1 2053517 g2497 i0 55 0.946372239747634 100 42 93.7 3 315 19 241 338 MCB0368268.1 DUF4215 domain-containing protein [Bdellovibrionales bacterium] diamond 300 107 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;